Evidence map›Paper›PMID 32724205›Full record

ArticleScientific reports2020

Necrotrophic lifestyle of Rhizoctonia solani AG3-PT during interaction with its host plant potato as revealed by transcriptome analysis.

Rita Zrenner, Franziska Genzel, Bart Verwaaijen, Daniel Wibberg, Rita Grosch

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
4.4field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 29 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Unveiling the Genetic Tapestry: ExploringPlants (Basel, Switzerland) · 2024
    Article
  6. Article
  7. Article
  8. Article
  9. Cell-Wall-Degrading Enzymes-Related Genes Originating fromInternational journal of molecular sciences · 2022
    Article
  10. Article
  11. Genome Analyses of the Less AggressiveJournal of fungi (Basel, Switzerland) · 2021
    Article
  12. Transcriptional Changes in Potato Sprouts upon Interaction withInternational journal of molecular sciences · 2021
    Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Rita ZrennerLeibniz Institute of Vegetable and Ornamental Crops Großbeeren (IGZ), 14979, Großbeeren, Germany. zrenner@igzev.de.
Franziska GenzelLeibniz Institute of Vegetable and Ornamental Crops Großbeeren (IGZ), 14979, Großbeeren, Germany.
Bart VerwaaijenLeibniz Institute of Vegetable and Ornamental Crops Großbeeren (IGZ), 14979, Großbeeren, Germany.
Daniel WibbergGenome Research of Industrial Microorganisms, Center for Biotechnology (CeBiTec), Bielefeld University, Universitätsstr. 27, 33615, Bielefeld, Germany.
Rita GroschLeibniz Institute of Vegetable and Ornamental Crops Großbeeren (IGZ), 14979, Großbeeren, Germany.
Leibniz Institute of Vegetable and Ornamental Crops · DEBielefeld University · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The soil-borne pathogen Rhizoctonia solani infects a broad range of plants worldwide and is responsible for significant crop losses. Rhizoctonia solani AG3-PT attacks germinating potato sprouts underground while molecular responses during interaction are unknown. To gain insights into processes induced in the fungus especially at early stage of interaction, transcriptional activity was compared between growth of mycelium in liquid culture and the growing fungus in interaction with potato sprouts using RNA-sequencing. Genes coding for enzymes with diverse hydrolase activities were strongly differentially expressed, however with remarkably dissimilar time response. While at 3 dpi, expression of genes coding for peptidases was predominantly induced, strongest induction was found for genes encoding hydrolases acting on cell wall components at 8 dpi. Several genes with unknown function were also differentially expressed, thus assuming putative roles as effectors to support host colonization. In summary, the presented analysis characterizes the necrotrophic lifestyle of R. solani AG3-PT during early interaction with its host.

Indexed as

Fungal ProteinsGene Expression ProfilingGene Expression Regulation, FungalHost-Pathogen InteractionsMyceliumPlant DiseasesRhizoctoniaSolanum tuberosumFungal Proteins

Identifiers

PMID32724205
PMCPMC7387450
OpenAlexW3045781595

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.