Evidence map›Paper›PMID 32724070›Full record

ArticleScientific reports2020

Narrow genetic base shapes population structure and linkage disequilibrium in an industrial oilseed crop, Brassica carinata A. Braun.

Yogendra Khedikar, Wayne E Clarke, Lifeng Chen, Erin E Higgins, Sateesh Kagale, Chu Shin Koh, Rick Bennett, Isobel A P Parkin

Abstract read
In one paragraph

Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Genetic Diversity Analysis Reveals Potential of the Green Peach Aphid (International journal of molecular sciences · 2022
    Article
  10. Article
  11. Recent Findings Unravel Genes and Genetic Factors UnderlyingInternational journal of molecular sciences · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Yogendra KhedikarAgriculture and Agri-Food Canada, 107 Science Place, Saskatoon, SK, Canada.
Wayne E ClarkeAgriculture and Agri-Food Canada, 107 Science Place, Saskatoon, SK, Canada.
Lifeng ChenAgrisoma Biosciences Inc., 110 Gymnasium Place, Saskatoon, SK, Canada.
Erin E HigginsAgriculture and Agri-Food Canada, 107 Science Place, Saskatoon, SK, Canada.
Sateesh KagaleNational Research Council Canada, 110 Gymnasium Place, Saskatoon, SK, Canada.
Chu Shin KohGlobal Institute of Food Security, Saskatoon, SK, Canada.
Rick BennettAgrisoma Biosciences Inc., 110 Gymnasium Place, Saskatoon, SK, Canada.
Isobel A P ParkinAgriculture and Agri-Food Canada, 107 Science Place, Saskatoon, SK, Canada. isobel.parkin@canada.ca.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Ethiopian mustard (Brassica carinata A. Braun) is an emerging sustainable source of vegetable oil, in particular for the biofuel industry. The present study exploited genome assemblies of the Brassica diploids, Brassica nigra and Brassica oleracea, to discover over 10,000 genome-wide SNPs using genotype by sequencing of 620 B. carinata lines. The analyses revealed a SNP frequency of one every 91.7 kb, a heterozygosity level of 0.30, nucleotide diversity levels of 1.31 × 10

Indexed as

IndustryChromosomes, PlantCrops, AgriculturalGenetics, PopulationGenetic VariationGenome, PlantHaplotypesLinkage DisequilibriumMustard PlantPolymorphism, Single NucleotideSelection, Genetic

Identifiers

PMID32724070
PMCPMC7387349

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.