Evidence map›Paper›PMID 32724037›Full record

ArticleScientific reports2020

Transcriptional portrait of M. bovis BCG during biofilm production shows genes differentially expressed during intercellular aggregation and substrate attachment.

Mario Alberto Flores-Valdez, Michel de Jesús Aceves-Sánchez, Eliza J R Peterson, Nitin Baliga, Jorge Bravo-Madrigal, Miguel Ángel De la Cruz-Villegas, Miguel A Ares, Sarah Born, Martin Voskuil, Nayeli Areli Pérez-Padilla and 3 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
0.9field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 26 citations in OpenAlex.

  1. Article
  2. TheeLife · 2025
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  7. mSystems · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 2 countries.

Mario Alberto Flores-ValdezBiotecnología Médica y Farmacéutica, Centro de Investigación y, Asistencia en Tecnología y diseño del Estado de Jalisco, A.C., Av. Normalistas 800, Col. Colinas de La Normal, 44270, Guadalajara, Jalisco, Mexico. floresv@ciatej.mx.
Michel de Jesús Aceves-SánchezBiotecnología Médica y Farmacéutica, Centro de Investigación y, Asistencia en Tecnología y diseño del Estado de Jalisco, A.C., Av. Normalistas 800, Col. Colinas de La Normal, 44270, Guadalajara, Jalisco, Mexico.
Eliza J R PetersonInstitute for Systems Biology, Seattle, WA, 98109, USA.
Nitin BaligaInstitute for Systems Biology, Seattle, WA, 98109, USA.
Jorge Bravo-MadrigalBiotecnología Médica y Farmacéutica, Centro de Investigación y, Asistencia en Tecnología y diseño del Estado de Jalisco, A.C., Av. Normalistas 800, Col. Colinas de La Normal, 44270, Guadalajara, Jalisco, Mexico.
Miguel Ángel De la Cruz-VillegasUnidad de Investigación Médica en Enfermedades Infecciosas y Parasitarias, Centro Médico Nacional (CMN) Siglo XXI, Instituto Mexicano de Seguro Social (IMSS), Mexico City, Mexico.
Miguel A AresUnidad de Investigación Médica en Enfermedades Infecciosas y Parasitarias, Centro Médico Nacional (CMN) Siglo XXI, Instituto Mexicano de Seguro Social (IMSS), Mexico City, Mexico.
Sarah BornDepartment of Immunology and Microbiology, University of Colorado School of Medicine, Aurora, CO, 80045, USA.
Martin VoskuilDepartment of Immunology and Microbiology, University of Colorado School of Medicine, Aurora, CO, 80045, USA.
Nayeli Areli Pérez-PadillaBiotecnología Médica y Farmacéutica, Centro de Investigación y, Asistencia en Tecnología y diseño del Estado de Jalisco, A.C., Av. Normalistas 800, Col. Colinas de La Normal, 44270, Guadalajara, Jalisco, Mexico.
Mirna Burciaga-FloresBiotecnología Médica y Farmacéutica, Centro de Investigación y, Asistencia en Tecnología y diseño del Estado de Jalisco, A.C., Av. Normalistas 800, Col. Colinas de La Normal, 44270, Guadalajara, Jalisco, Mexico.
Tanya Amanda Camacho-VillegasBiotecnología Médica y Farmacéutica, Centro de Investigación y, Asistencia en Tecnología y diseño del Estado de Jalisco, A.C., Av. Normalistas 800, Col. Colinas de La Normal, 44270, Guadalajara, Jalisco, Mexico.
María Guadalupe Espinoza-JorgeBiotecnología Médica y Farmacéutica, Centro de Investigación y, Asistencia en Tecnología y diseño del Estado de Jalisco, A.C., Av. Normalistas 800, Col. Colinas de La Normal, 44270, Guadalajara, Jalisco, Mexico.
Secretaría de Salud de Jalisco · MXCentro de Investigación y Asistencia en Tecnología y Diseño del Estado de JaliscoInstitute for Systems Biology · USMexican Social Security Institute · MXUniversity of Colorado Denver · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Mycobacterium tuberculosis and M. smegmatis form drug-tolerant biofilms through dedicated genetic programs. In support of a stepwise process regulating biofilm production in mycobacteria, it was shown elsewhere that lsr2 participates in intercellular aggregation, while groEL1 was required for biofilm maturation in M. smegmatis. Here, by means of RNA-Seq, we monitored the early steps of biofilm production in M. bovis BCG, to distinguish intercellular aggregation from attachment to a surface. Genes encoding for the transcriptional regulators dosR and BCG0114 (Rv0081) were significantly regulated and responded differently to intercellular aggregation and surface attachment. Moreover, a M. tuberculosis H37Rv deletion mutant in the Rv3134c-dosS-dosR regulon, formed less biofilm than wild type M. tuberculosis, a phenotype reverted upon reintroduction of this operon into the mutant. Combining RT-qPCR with microbiological assays (colony and surface pellicle morphologies, biofilm quantification, Ziehl-Neelsen staining, growth curve and replication of planktonic cells), we found that BCG0642c affected biofilm production and replication of planktonic BCG, whereas ethR affected only phenotypes linked to planktonic cells despite its downregulation at the intercellular aggregation step. Our results provide evidence for a stage-dependent expression of genes that contribute to biofilm production in slow-growing mycobacteria.

Indexed as

BiofilmsBacterial AdhesionBacterial ProteinsBCG VaccineGene Expression Regulation, BacterialMycobacterium bovisMycobacterium tuberculosisOperonRegulonTranscription, GeneticBacterial ProteinsBCG Vaccine

Identifiers

PMID32724037
PMCPMC7387457
OpenAlexW3046072219

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.