Evidence map›Paper›PMID 32719514›Full record

ArticleNature biomedical engineering2021

Classification of T-cell activation via autofluorescence lifetime imaging.

Alex J Walsh, Katherine P Mueller, Kelsey Tweed, Isabel Jones, Christine M Walsh, Nicole J Piscopo, Natalie M Niemi, David J Pagliarini, Krishanu Saha, Melissa C Skala

Open access · greenAbstract read
In one paragraph

Article in Nature biomedical engineering, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 117 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
117citing papers in PubMed, 1 pooled it
7.7field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

117 citing papers in PubMed, 1 synthesis or guideline pooled it, 166 citations in OpenAlex.

  1. Pooled it
  2. Impact of noise on optical redox ratio estimation.bioRxiv : the preprint server for biology · 2026
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  18. Insights into the biological effects of molybdenum in an insect model (Frontiers in bioengineering and biotechnology · 2026
    Article
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57 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Alex J WalshMorgridge Institute for Research, Madison, WI, USA. walshaj@tamu.edu.ORCID http://orcid.org/0000-0003-3832-8207
Katherine P MuellerWisconsin Institute for Discovery, University of Wisconsin-Madison, Madison, WI, USA.ORCID http://orcid.org/0000-0002-1873-3638
Kelsey TweedMorgridge Institute for Research, Madison, WI, USA.
Isabel JonesMorgridge Institute for Research, Madison, WI, USA.
Christine M WalshMorgridge Institute for Research, Madison, WI, USA.
Nicole J PiscopoWisconsin Institute for Discovery, University of Wisconsin-Madison, Madison, WI, USA.
Natalie M NiemiMorgridge Institute for Research, Madison, WI, USA.ORCID http://orcid.org/0000-0002-5174-4005
David J PagliariniMorgridge Institute for Research, Madison, WI, USA.ORCID http://orcid.org/0000-0002-0001-0087
Krishanu SahaWisconsin Institute for Discovery, University of Wisconsin-Madison, Madison, WI, USA.ORCID http://orcid.org/0000-0003-2837-0858
Melissa C SkalaMorgridge Institute for Research, Madison, WI, USA. mcskala@wisc.edu.ORCID http://orcid.org/0000-0002-6320-7637
University of Wisconsin–Madison · USMorgridge Institute for Research · USAlbany State University · US

Funding

BIOTECHNOLOGY TRAINING PROGRAMT32GM008349 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI FOX, BRIAN G · 1989 to 2019
$22.5M
TRAINING IN NUTRITIONT32DK007665 · NIDDK · UNIVERSITY OF WISCONSIN-MADISON · PI GUY E GROBLEWSKI, Chi- Liang Eric Yen · 1993 to 2026
$9.2M
Biotechnology Training ProgramT32GM135066 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI SCOTT M. COYLE, BRIAN G FOX · 2020 to 2026
$7.0M
Regulation of Mitochondrial Metabolism by Post-Translational ModificationsR01DK098672 · NIDDK · WASHINGTON UNIVERSITY · PI David J Pagliarini · 2013 to 2026
$4.8M
Systems-to-structure approaches for defining mitochondrial protein functionR35GM131795 · NIGMS · WASHINGTON UNIVERSITY · PI David J Pagliarini · 2019 to 2026
$4.8M
Optical imaging of pancreas cancer organoids for drug development and personalized treatmentR01CA211082 · NCI · MORGRIDGE INSTITUTE FOR RESEARCH, INC. · PI SKALA, MELISSA CAROLINE · 2017 to 2021
$3.5M
(PQ7) Quantitative in vivo optical imaging of tumor heterogeneityR01CA205101 · NCI · MORGRIDGE INSTITUTE FOR RESEARCH, INC. · PI SKALA, MELISSA CAROLINE · 2016 to 2020
$1.9M
Cellular-level Optical Metabolic Imaging to Predict Drug Response in CancerR01CA185747 · NCI · VANDERBILT UNIVERSITY · PI SKALA, MELISSA CAROLINE · 2014 to 2019
$1.6M
NCI NIH HHS R01 CA185747NCI NIH HHS R01 CA205101NCI NIH HHS R01 CA211082NIDDK NIH HHS R01 DK098672NIDDK NIH HHS T32 DK007665NIGMS NIH HHS R35 GM131795NIGMS NIH HHS T32 GM008349NIGMS NIH HHS T32 GM135066
6 · The paper itself

Abstract

The function of a T cell depends on its subtype and activation state. Here, we show that imaging of the autofluorescence lifetime signals of quiescent and activated T cells can be used to classify the cells. T cells isolated from human peripheral blood and activated in culture using tetrameric antibodies against the surface ligands CD2, CD3 and CD28 showed specific activation-state-dependent patterns of autofluorescence lifetime. Logistic regression models and random forest models classified T cells according to activation state with 97-99% accuracy, and according to activation state (quiescent or activated) and subtype (CD3

Indexed as

T-LymphocytesCells, CulturedHumansLymphocyte ActivationOptical Imaging

Identifiers

PMID32719514
PMCPMC7854821
OpenAlexW3045474441

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.