Evidence map›Paper›PMID 32719479›Full record

ArticleNature biotechnology2021

Inducible de novo expression of neoantigens in tumor cells and mice.

Martina Damo, Brittany Fitzgerald, Yisi Lu, Mursal Nader, Ivana William, Julie F Cheung, Kelli A Connolly, Gena G Foster, Elliot Akama-Garren, Da-Yae Lee and 11 more

Open access · greenAbstract read
In one paragraph

Article in Nature biotechnology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
2.8field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 54 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 3 institutions in 1 country.

Martina Damo *Department of Immunobiology, Yale University School of Medicine, New Haven, CT, USA.ORCID http://orcid.org/0000-0002-7217-3221
Brittany Fitzgerald *Department of Immunobiology, Yale University School of Medicine, New Haven, CT, USA.
Yisi LuKoch Institute for Integrative Cancer Research and Department of Biology, Massachusetts Institute of Technology, Cambridge, MA, USA.ORCID http://orcid.org/0000-0002-7960-5445
Mursal NaderDepartment of Immunobiology, Yale University School of Medicine, New Haven, CT, USA.
Ivana WilliamDepartment of Immunobiology, Yale University School of Medicine, New Haven, CT, USA.
Julie F CheungDepartment of Immunobiology, Yale University School of Medicine, New Haven, CT, USA.ORCID http://orcid.org/0000-0003-1346-0930
Kelli A ConnollyDepartment of Immunobiology, Yale University School of Medicine, New Haven, CT, USA.
Gena G FosterDepartment of Immunobiology, Yale University School of Medicine, New Haven, CT, USA.ORCID http://orcid.org/0000-0003-3482-0579
Elliot Akama-GarrenKoch Institute for Integrative Cancer Research and Department of Biology, Massachusetts Institute of Technology, Cambridge, MA, USA.
Da-Yae LeeKoch Institute for Integrative Cancer Research and Department of Biology, Massachusetts Institute of Technology, Cambridge, MA, USA.
Greg P ChangKoch Institute for Integrative Cancer Research and Department of Biology, Massachusetts Institute of Technology, Cambridge, MA, USA.
Vasilena GochevaKoch Institute for Integrative Cancer Research and Department of Biology, Massachusetts Institute of Technology, Cambridge, MA, USA.
Leah M SchmidtKoch Institute for Integrative Cancer Research and Department of Biology, Massachusetts Institute of Technology, Cambridge, MA, USA.
Alice BoileveKoch Institute for Integrative Cancer Research and Department of Biology, Massachusetts Institute of Technology, Cambridge, MA, USA.
Josephine H WilsonDepartment of Immunobiology, Yale University School of Medicine, New Haven, CT, USA.
Can CuiDepartment of Immunobiology, Yale University School of Medicine, New Haven, CT, USA.ORCID http://orcid.org/0000-0003-4736-4330
Isabel MonroyDepartment of Immunobiology, Yale University School of Medicine, New Haven, CT, USA.
Prashanth GokareDepartment of Immunobiology, Yale University School of Medicine, New Haven, CT, USA.
Peter CabeceirasKoch Institute for Integrative Cancer Research and Department of Biology, Massachusetts Institute of Technology, Cambridge, MA, USA.
Tyler Jacks *Koch Institute for Integrative Cancer Research and Department of Biology, Massachusetts Institute of Technology, Cambridge, MA, USA. tjacks@mit.edu.ORCID http://orcid.org/0000-0001-5785-8911
Nikhil S Joshi *Department of Immunobiology, Yale University School of Medicine, New Haven, CT, USA. nikhil.joshi@yale.edu.ORCID http://orcid.org/0000-0002-7045-7837
Yale University · USMassachusetts Institute of Technology · USHoward Hughes Medical Institute · US

Funding

Yale Clinical and Translational Science Award (U Component)UL1TR001863 · NCATS · YALE UNIVERSITY · PI John H. Krystal, LUCILA OHNO-MACHADO · 2016 to 2026
$102.9M
Yale Pathology Tissue Services Shared ResourceP30CA016359 · NCI · YALE UNIVERSITY · PI MEGAN C KING · 1985 to 2026
$85.0M
Yale Diabetes Research CenterP30DK045735 · NIDDK · YALE UNIVERSITY · PI Kevan C Herold, GERALD I SHULMAN · 1993 to 2026
$44.0M
Yale Liver CenterP30DK034989 · NIDDK · YALE UNIVERSITY · PI YASUKO IWAKIRI · 1986 to 2026
$31.1M
INTERDISCIPLINARY IMMUNOLOGY TRAINING PROGRAMT32AI007019 · NIAID · YALE UNIVERSITY · PI Carrie L. Lucas, David G. Schatz · 1985 to 2026
$14.4M
IMMUNOHEMATOLOGY/TRANSFUSION MEDICINE RESEARCH TRAININGT32HL007974 · NHLBI · YALE UNIVERSITY · PI JEANNE E HENDRICKSON, Diane S Krause · 2001 to 2026
$8.1M
Yale Cancer Center Advanced Training Program for Physician-Scientists (YCC-ATPP)T32CA233414 · NCI · YALE UNIVERSITY · PI Eric P. Winer · 2019 to 2026
$3.2M
Developing translationally-relevant genetically engineered mouse models of lung adenocarcinoma for investigations in cancer immunologyR01CA237037 · NCI · YALE UNIVERSITY · PI JOSHI, NIKHIL · 2020 to 2024
$2.7M
Investigating the development and maintenance of tumor-associated tertiary lymphoid structures in an autochthonous mouse model of lung adenocarcinomaK22CA200912 · NCI · YALE UNIVERSITY · PI JOSHI, NIKHIL · 2016 to 2018
$587k
Howard Hughes Medical InstituteNCATS NIH HHS UL1 TR001863NCI NIH HHS K22 CA200912NCI NIH HHS P30 CA016359NCI NIH HHS R01 CA237037NCI NIH HHS T32 CA233414NHLBI NIH HHS T32 HL007974NIAID NIH HHS T32 AI007019NIDDK NIH HHS P30 DK034989NIDDK NIH HHS P30 DK045735
6 · The paper itself

Abstract

Inducible expression of neoantigens in mice would enable the study of endogenous antigen-specific naïve T cell responses in disease and infection, but has been difficult to generate because leaky antigen expression in the thymus results in central T cell tolerance. Here we develop inversion-induced joined neoantigen (NINJA), using RNA splicing, DNA recombination and three levels of regulation to prevent leakiness and allow tight control over neoantigen expression. We apply NINJA to create tumor cell lines with inducible neoantigen expression, which could be used to study antitumor immunity. We also show that the genetic regulation in NINJA mice bypasses central and peripheral tolerance mechanisms and allows for robust endogenous CD8 and CD4 T cell responses on neoantigen induction in peripheral tissues. NINJA will enable studies of how T cells respond to defined neoantigens in the context of peripheral tolerance, transplantation, autoimmune diseases and cancer.

Indexed as

Antigens, NeoplasmAnimalsCD4-Positive T-LymphocytesCD8-Positive T-LymphocytesCell EngineeringFemaleHumansMiceOrgan SpecificityRNA SplicingTumor Cells, CulturedAntigens, Neoplasm

Identifiers

PMID32719479
PMCPMC7854852
OpenAlexW3044452563

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.