Evidence map›Paper›PMID 32719381›Full record

ArticleScientific reports2020

Functional characterization of three Azotobacter chroococcum alginate-modifying enzymes related to the Azotobacter vinelandii AlgE mannuronan C-5-epimerase family.

Agnieszka Gawin, Lisa Tietze, Olav A Aarstad, Finn L Aachmann, Trygve Brautaset, Helga Ertesvåg

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
2.8field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 33 citations in OpenAlex.

  1. Article
  2. Immobilization of alginate C-5 epimerases usingApplied and environmental microbiology · 2025
    Article
  3. Advances in alginate biosynthesis: regulation and production inFrontiers in bioengineering and biotechnology · 2025
    Review
  4. Article
  5. Article
  6. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Agnieszka GawinDepartment of Biotechnology and Food Science, NTNU Norwegian University of Science and Technology, Sem Sælandsvei 6/8, 7491, Trondheim, Norway.
Lisa TietzeDepartment of Biotechnology and Food Science, NTNU Norwegian University of Science and Technology, Sem Sælandsvei 6/8, 7491, Trondheim, Norway.
Olav A AarstadDepartment of Biotechnology and Food Science, NTNU Norwegian University of Science and Technology, Sem Sælandsvei 6/8, 7491, Trondheim, Norway.
Finn L AachmannDepartment of Biotechnology and Food Science, NTNU Norwegian University of Science and Technology, Sem Sælandsvei 6/8, 7491, Trondheim, Norway.
Trygve BrautasetDepartment of Biotechnology and Food Science, NTNU Norwegian University of Science and Technology, Sem Sælandsvei 6/8, 7491, Trondheim, Norway.
Helga ErtesvågDepartment of Biotechnology and Food Science, NTNU Norwegian University of Science and Technology, Sem Sælandsvei 6/8, 7491, Trondheim, Norway. helga.ertesvag@ntnu.no.
Norwegian University of Science and Technology · NO

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Bacterial alginate initially consists of 1-4-linked β-D-mannuronic acid residues (M) which can be later epimerized to α-L-guluronic acid (G). The family of AlgE mannuronan C-5-epimerases from Azotobacter vinelandii has been extensively studied, and three genes putatively encoding AlgE-type epimerases have recently been identified in the genome of Azotobacter chroococcum. The three A. chroococcum genes, here designated AcalgE1, AcalgE2 and AcalgE3, were recombinantly expressed in Escherichia coli and the gene products were partially purified. The catalytic activities of the enzymes were stimulated by the addition of calcium ions in vitro. AcAlgE1 displayed epimerase activity and was able to introduce long G-blocks in the alginate substrate, preferentially by attacking M residues next to pre-existing G residues. AcAlgE2 and AcAlgE3 were found to display lyase activities with a substrate preference toward M-alginate. AcAlgE2 solely accepted M residues in the positions - 1 and + 2 relative to the cleavage site, while AcAlgE3 could accept either M or G residues in these two positions. Both AcAlgE2 and AcAlgE3 were bifunctional and could also catalyze epimerization of M to G. Together, we demonstrate that A. chroococcum encodes three different AlgE-like alginate-modifying enzymes and the biotechnological and biological impact of these findings are discussed.

Indexed as

AlginatesAmino Acid SequenceAzotobacterAzotobacter vinelandiiBacterial ProteinsBiocatalysisCarbohydrate EpimerasesGenes, BacterialMultigene FamilySequence AlignmentSubstrate SpecificityAlginatesBacterial ProteinsCarbohydrate Epimerasesmannuronan c-5-epimerase

Identifiers

PMID32719381
PMCPMC7385640
OpenAlexW3044325211

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.