Evidence map›Paper›PMID 32719005›Full record

ArticleThe Journal of biological chemistry2020

Structure of a collagen VI α3 chain VWA domain array: adaptability and functional implications of myopathy causing mutations.

Herimela Solomon-Degefa, Jan M Gebauer, Cy M Jeffries, Carolin D Freiburg, Patrick Meckelburg, Louise E Bird, Ulrich Baumann, Dmitri I Svergun, Raymond J Owens, Jörn M Werner and 3 more

Abstract read
In one paragraph

Article in The Journal of biological chemistry, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. The UCMD-CausingHuman mutation · 2023
    Article
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Herimela Solomon-DegefaCenter for Biochemistry, Medical Faculty, University of Cologne, Cologne, Germany.
Jan M GebauerInstitute of Biochemistry, University of Cologne, Cologne, Germany.ORCID 0000-0002-3989-4748
Cy M JeffriesEuropean Molecular Biology Laboratory, Hamburg Unit, Hamburg, Germany.
Carolin D FreiburgCenter for Biochemistry, Medical Faculty, University of Cologne, Cologne, Germany.
Patrick MeckelburgInstitute of Biochemistry, University of Cologne, Cologne, Germany.
Louise E BirdThe Research Complex at Harwell, Rutherford Appleton Laboratory Harwell, Oxford, United Kingdom.
Ulrich BaumannInstitute of Biochemistry, University of Cologne, Cologne, Germany.
Dmitri I SvergunEuropean Molecular Biology Laboratory, Hamburg Unit, Hamburg, Germany.
Raymond J OwensThe Research Complex at Harwell, Rutherford Appleton Laboratory Harwell, Oxford, United Kingdom.
Jörn M WernerSchool of Biological Sciences, University of Southampton, Southampton, United Kingdom.ORCID 0000-0002-4712-1833
Elmar BehrmannInstitute of Biochemistry, University of Cologne, Cologne, Germany.
Mats PaulssonCenter for Biochemistry, Medical Faculty, University of Cologne, Cologne, Germany.
Raimund WagenerCenter for Biochemistry, Medical Faculty, University of Cologne, Cologne, Germany raimund.wagener@uni-koeln.de.

Funding

Medical Research Council MR/K018779/1
6 · The paper itself

Abstract

Collagen VI is a ubiquitous heterotrimeric protein of the extracellular matrix (ECM) that plays an essential role in the proper maintenance of skeletal muscle. Mutations in collagen VI lead to a spectrum of congenital myopathies, from the mild Bethlem myopathy to the severe Ullrich congenital muscular dystrophy. Collagen VI contains only a short triple helix and consists primarily of von Willebrand factor type A (VWA) domains, protein-protein interaction modules found in a range of ECM proteins. Disease-causing mutations occur commonly in the VWA domains, and the second VWA domain of the α3 chain, the N2 domain, harbors several such mutations. Here, we investigate structure-function relationships of the N2 mutations to shed light on their possible myopathy mechanisms. We determined the X-ray crystal structure of N2, combined with monitoring secretion efficiency in cell culture of selected N2 single-domain mutants, finding that mutations located within the central core of the domain severely affect secretion efficiency. In longer α3 chain constructs, spanning N6-N3, small-angle X-ray scattering demonstrates that the tandem VWA array has a modular architecture and samples multiple conformations in solution. Single-particle EM confirmed the presence of multiple conformations. Structural adaptability appears intrinsic to the VWA domain region of collagen VI α3 and has implications for binding interactions and modulating stiffness within the ECM.

Indexed as

Muscular DiseasesMutationCollagen Type VICrystallography, X-RayHumansProtein DomainsCOL6A3 protein, humanCollagen Type VIcollagencollagen VIcrystallographyelectron microscopy (EM)extracellular matrixextracellular matrix proteinmuscular dystrophymyopathysingle-particle analysissingle-particle EMsmall-angle X-ray scattering (SAXS)VWA domain

Identifiers

PMID32719005
PMCPMC7476709

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.