Evidence map›Paper›PMID 32716960›Full record

ArticlePloS one2020

Metabolic engineering considerations for the heterologous expression of xylose-catabolic pathways in Saccharomyces cerevisiae.

Deokyeol Jeong, Eun Joong Oh, Ja Kyong Ko, Ju-Ock Nam, Hee-Soo Park, Yong-Su Jin, Eun Jung Lee, Soo Rin Kim

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
2.5field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 46 citations in OpenAlex.

  1. Article
  2. Engineering the acid-tolerant yeastFrontiers in microbiology · 2026
    Article
  3. Review
  4. Review
  5. Metabolic Engineering ofMolecules (Basel, Switzerland) · 2024
    Article
  6. Article
  7. Article
  8. Review
  9. Review
  10. Article
  11. Cellulosic Ethanol Production Using a Dual Functional Novel Yeast.International journal of microbiology · 2022
    Review
  12. Article
  13. l-Lactic Acid Production Using EngineeredJournal of fungi (Basel, Switzerland) · 2021
    Article
  14. Transcriptomic Changes Induced by Deletion of Transcriptional RegulatorFrontiers in bioengineering and biotechnology · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 2 countries.

Deokyeol JeongSchool of Food Science and Biotechnology, Kyungpook National University, Daegu, Republic of Korea.
Eun Joong OhRenewable and Sustainable Energy Institute (RASEI), University of Colorado Boulder, Boulder, Colorado, United States of America.
Ja Kyong KoClean Energy Research Center, Korea Institute of Science and Technology (KIST), Seoul, Republic of Korea.
Ju-Ock NamSchool of Food Science and Biotechnology, Kyungpook National University, Daegu, Republic of Korea.
Hee-Soo ParkSchool of Food Science and Biotechnology, Kyungpook National University, Daegu, Republic of Korea.
Yong-Su JinCarl R. Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, Illinois, United States of America.
Eun Jung LeeDepartment of Chemical Engineering, School of Applied Chemical Engineering, Kyungpook National University, Daegu, Republic of Korea.
Soo Rin KimSchool of Food Science and Biotechnology, Kyungpook National University, Daegu, Republic of Korea.ORCID 0000-0001-5855-643X
Kyungpook National University · KRKorea Institute of Science and Technology · KRUniversity of Colorado Boulder · USUniversity of Illinois Urbana-Champaign · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Xylose, the second most abundant sugar in lignocellulosic biomass hydrolysates, can be fermented by Saccharomyces cerevisiae expressing one of two heterologous xylose pathways: a xylose oxidoreductase pathway and a xylose isomerase pathway. Depending on the type of the pathway, its optimization strategies and the fermentation efficiencies vary significantly. In the present study, we constructed two isogenic strains expressing either the oxidoreductase pathway (XYL123) or the isomerase pathway (XI-XYL3), and delved into simple and reproducible ways to improve the resulting strains. First, the strains were subjected to the deletion of PHO13, overexpression of TAL1, and adaptive evolution, but those individual approaches were only effective in the XYL123 strain but not in the XI-XYL3 strain. Among other optimization strategies of the XI-XYL3 strain, we found that increasing the copy number of the xylose isomerase gene (xylA) is the most promising but yet preliminary strategy for the improvement. These results suggest that the oxidoreductase pathway might provide a simpler metabolic engineering strategy than the isomerase pathway for the development of efficient xylose-fermenting strains under the conditions tested in the present study.

Indexed as

Metabolic EngineeringMetabolic Networks and PathwaysAldose-Ketose IsomerasesBiological EvolutionFermentationGene DeletionSaccharomyces cerevisiaeTranscription, GeneticXyloseAldose-Ketose IsomerasesXylosexylose isomerase

Identifiers

PMID32716960
PMCPMC7384654
OpenAlexW3045812045

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.