Evidence map›Paper›PMID 32716698›Full record

ArticlePhysiological genomics2020

miR-125 family regulates XIRP1 and FIH in response to myocardial infarction.

Allison Lesher Williams, Vedbar S Khadka, Ma C T Anagaran, Katie Lee, Abigail Avelar, Youping Deng, Ralph V Shohet

Open access · greenAbstract read
In one paragraph

Article in Physiological genomics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.1field-weighted citation impact, top 62% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Allison Lesher WilliamsCenter for Cardiovascular Research, John A. Burns School of Medicine, University of Hawaii, Honolulu, Hawaii.ORCID 0000-0002-2920-1733
Vedbar S KhadkaBioinformatics Core, John A. Burns School of Medicine, University of Hawaii, Honolulu, Hawaii.
Ma C T AnagaranCenter for Cardiovascular Research, John A. Burns School of Medicine, University of Hawaii, Honolulu, Hawaii.
Katie LeeCenter for Cardiovascular Research, John A. Burns School of Medicine, University of Hawaii, Honolulu, Hawaii.
Abigail AvelarCenter for Cardiovascular Research, John A. Burns School of Medicine, University of Hawaii, Honolulu, Hawaii.
Youping DengBioinformatics Core, John A. Burns School of Medicine, University of Hawaii, Honolulu, Hawaii.
Ralph V ShohetCenter for Cardiovascular Research, John A. Burns School of Medicine, University of Hawaii, Honolulu, Hawaii.ORCID 0000-0001-5966-6470
University of Hawaiʻi at Mānoa · US

Funding

UH Hilo COP A&RP20GM103466 · NIGMS · UNIVERSITY OF HAWAII AT MANOA · PI Peter R Hoffmann · 2012 to 2026
$60.3M
The Role of gp120 on Cardiovascular Disease in People Living with HIVU54MD007601 · NIMHD · UNIVERSITY OF HAWAII AT MANOA · PI Lee Ellen Buenconsejo-Lum, Jerris Robert Hedges · 2017 to 2026
$59.5M
University of Hawaii Cancer Center CCSGP30CA071789 · NCI · UNIVERSITY OF HAWAII AT MANOA · PI GERTRAUD MASKARINEC · 1996 to 2026
$56.2M
TRPA1 Physiology in Diabetes, Metabolic Syndrome, and MetabolismP20GM113134 · NIGMS · UNIVERSITY OF HAWAII AT MANOA · PI Michael A. Ortega · 2017 to 2026
$21.5M
RESEARCH DESIGN, BIOSTATISTICS AND RESEARCH ETHICS COREG12MD007601 · NIMHD · UNIVERSITY OF HAWAII AT MANOA · PI BERRY, MARLA J · 2012 to 2016
$13.0M
Small Grants ProgramP30GM114737 · NIGMS · UNIVERSITY OF HAWAII AT MANOA · PI YANAGIHARA, RICHARD · 2015 to 2022
$8.1M
Pilot Project ProgramP30GM103341 · NIGMS · UNIVERSITY OF HAWAII AT MANOA · PI SHOHET, RALPH V. · 2012 to 2016
$5.5M
Training in Cardiovascular Research at the University of HawaiiT32HL115505 · NHLBI · UNIVERSITY OF HAWAII AT MANOA · PI Michelle D Tallquist · 2012 to 2026
$3.8M
Transcriptional/physiological analysis of cardiac HIF1R01HL080532 · NHLBI · UNIVERSITY OF HAWAII AT MANOA · PI SHOHET, RALPH V. · 2006 to 2009
$1.7M
American Heart Association-American Stroke Association 16POST29960013NCI NIH HHS CA071789NCI NIH HHS P30 CA071789NHLBI NIH HHS HL080532NHLBI NIH HHS HL115505NHLBI NIH HHS R01 HL080532NHLBI NIH HHS T32 HL115505NIGMS NIH HHS GM103341NIGMS NIH HHS GM103466NIGMS NIH HHS GM114737NIGMS NIH HHS P20 GM103466NIGMS NIH HHS P20 GM113134NIGMS NIH HHS P30 GM103341NIGMS NIH HHS P30 GM114737NIMHD NIH HHS G12 MD007601NIMHD NIH HHS MD007601NIMHD NIH HHS U54 MD007601
6 · The paper itself

Abstract

MicroRNAs (miRNAs) are powerful regulators of protein expression. Many play important roles in cardiac development and disease. While several miRNAs and targets have been well characterized, the abundance of miRNAs and the numerous potential targets for each suggest that the vast majority of these interactions have yet to be described. The goal of this study was to characterize miRNA expression in the mouse heart after coronary artery ligation (LIG) and identify novel mRNA targets altered during the initial response to ischemic stress. We performed small RNA sequencing (RNA-Seq) of ischemic heart tissue 1 day and 3 days after ligation and identified 182 differentially expressed miRNAs. We then selected relevant mRNA targets from all potential targets by correlating miRNA and mRNA expression from a corresponding RNA-Seq data set. From this analysis we chose to focus, as proof of principle, on two miRNAs from the miR-125 family, miR-125a and miR-351, and two of their potential mRNA targets, Xin actin-binding repeat-containing protein 1 (

Indexed as

AnimalsCytoskeletal ProteinsDisease Models, AnimalDNA-Binding ProteinsFemaleMaleMiceMice, Inbred C57BLMicroRNAsMixed Function OxygenasesMyocardial InfarctionProtein BindingReal-Time Polymerase Chain ReactionRNA, MessengerRNA-SeqSignal TransductionCMYA1 protein, mouseCytoskeletal ProteinsDNA-Binding Proteinsfactor inhibiting hypoxia-inducible factor 1, mouseMicroRNAsMirn125 microRNA, mouseMIRN351 microRNA, 351Mixed Function OxygenasesRNA, MessengerFIHmiR-125miR-351miRNAmyocardial infarctionXinαXIRP1

Identifiers

PMID32716698
PMCPMC7473889
OpenAlexW3045603396

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.