Evidence map›Paper›PMID 32716298›Full record

ArticleeLife2020

Interrogating the recognition landscape of a conserved HIV-specific TCR reveals distinct bacterial peptide cross-reactivity.

Juan L Mendoza, Suzanne Fischer, Marvin H Gee, Lilian H Lam, Simon Brackenridge, Fiona M Powrie, Michael Birnbaum, Andrew J McMichael, K Christopher Garcia, Geraldine M Gillespie

Open access · goldAbstract read
In one paragraph

Article in eLife, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.8field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 9 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Juan L MendozaDepartment of Molecular and Cellular Physiology, Stanford University School of Medicine, Stanford, United States.
Suzanne FischerDepartment of Molecular and Cellular Physiology, Stanford University School of Medicine, Stanford, United States.
Marvin H GeeDepartment of Molecular and Cellular Physiology, Stanford University School of Medicine, Stanford, United States.
Lilian H LamKennedy Institute of Rheumatology, University of Oxford, Oxford, United Kingdom.ORCID 0000-0003-3582-9209
Simon BrackenridgeNuffield Department of Medicine, University of Oxford, NDM Research Building, Old Road Campus, Headington, Oxford, United Kingdom.ORCID 0000-0002-0587-7560
Fiona M PowrieKennedy Institute of Rheumatology, University of Oxford, Oxford, United Kingdom.
Michael BirnbaumDepartment of Molecular and Cellular Physiology, Stanford University School of Medicine, Stanford, United States.
Andrew J McMichaelNuffield Department of Medicine, University of Oxford, NDM Research Building, Old Road Campus, Headington, Oxford, United Kingdom.
K Christopher GarciaDepartment of Molecular and Cellular Physiology, Stanford University School of Medicine, Stanford, United States.ORCID 0000-0001-9273-0278
Geraldine M GillespieNuffield Department of Medicine, University of Oxford, NDM Research Building, Old Road Campus, Headington, Oxford, United Kingdom.ORCID 0000-0002-1075-870X
Stanford University · USUniversity of Oxford · GBJohn Radcliffe Hospital · GBHoward Hughes Medical Institute · US

Funding

Using a tonsil organoid system to probe conditions for the induction of protective antibody and T cell responses to influenza.U19AI057229 · NIAID · STANFORD UNIVERSITY · PI Mark Morris Davis · 2003 to 2026
$88.5M
Structural correlates of T cell receptor signalingR01AI103867 · NIAID · STANFORD UNIVERSITY · PI Kenan Christopher GARCIA · 2014 to 2026
$5.3M
Howard Hughes Medical InstituteMedical Research Council MR/M019837/1NIAID NIH HHS R01 AI103867NIAID NIH HHS U19 AI057229
6 · The paper itself

Abstract

T cell cross-reactivity ensures that diverse pathogen-derived epitopes encountered during a lifetime are recognized by the available TCR repertoire. A feature of cross-reactivity where previous exposure to one microbe can alter immunity to subsequent, non-related pathogens has been mainly explored for viruses. Yet cross-reactivity to additional microbes is important to consider, especially in HIV infection where gut-intestinal barrier dysfunction could facilitate T cell exposure to commensal/pathogenic microbes. Here we evaluated the cross-reactivity of a 'public', HIV-specific, CD8 T cell-derived TCR (AGA1 TCR) using MHC class I yeast display technology. Via screening of MHC-restricted libraries comprising ~2×10

Indexed as

Histocompatibility Antigens Class IAntigens, BacterialCross ReactionsHL-60 CellsHumansReceptors, Antigen, T-CellAntigens, BacterialHistocompatibility Antigens Class IReceptors, Antigen, T-CellCD8 T cellsHIVhumanimmunologyinflammationMHCsporosarcina newyorkensis

Identifiers

PMID32716298
PMCPMC7384859
OpenAlexW3044216553

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.