ArticleScientific reports2020
A high-quality reference genome for cabbage obtained with SMRT reveals novel genomic features and evolutionary characteristics.
Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.
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30 citing papers in PubMed.
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- AlloSHP: deconvoluting single homeologous polymorphism for phylogenetic analysis of allopolyploids.Plant methods · 2025Article
- Genomic Divergence Shaped the Genetic Regulation of Meiotic Homologous Recombination in Brassica Allopolyploids.Molecular biology and evolution · 2025Article
- Brassica Panache: A multi-species graph pangenome representing presence absence variation across forty-one Brassica genomes.The plant genome · 2025Article
- Identification of three novel QTL for resistance to highly aggressive Canadian strains ofFrontiers in plant science · 2025Article
- Genetic Relationships and Molecular Signatures of Divergence in Traditional Landraces and Morphotypes ofPlants (Basel, Switzerland) · 2024Article
- A stepwise guide for pangenome development in crop plants: an alfalfa (Medicago sativa) case study.BMC genomics · 2024Review
- Genome-wide characterization and expression profiling of FARL (FHY3/FAR1) family genes in Zea mays.Journal, genetic engineering & biotechnology · 2024Article
- Resynthesizing Brassica napus with race specific resistance genes and race non-specific QTLs to multiple races of Plasmodiophora brassicae.Scientific reports · 2024Article
- Chromosome-scale reference genome of broccoli (Horticulture research · 2024Article
- Large-scale gene expression alterations introduced by structural variation drive morphotype diversification in Brassica oleracea.Nature genetics · 2024Article
- A graph-based pan-genome of Brassica oleracea provides new insights into its domestication and morphotype diversification.Plant communications · 2024Article
- Article
- Identification of QTLs for resistance to 10 pathotypes of Plasmodiophora brassicae in Brassica oleracea cultivar ECD11 through genotyping-by-sequencing.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2023Article
- The high-quality sequencing of theHorticulture research · 2023Article
- Whole-Genome Comparison Reveals Structural Variations behind Heading Leaf Trait inInternational journal of molecular sciences · 2023Article
- Characterization and acceleration of genome shuffling and ploidy reduction in synthetic allopolyploids by genome sequencing and editing.Nucleic acids research · 2023Article
- The final piece of the Triangle of U: Evolution of the tetraploid Brassica carinata genome.The Plant cell · 2022Article
- Comparison of ONT and CCS sequencing technologies on the polyploid genome of a medicinal plant showed that high error rate of ONT reads are not suitable for self-correction.Chinese medicine · 2022Article
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9 authors.
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Abstract
Cabbage (Brassica oleracea var. capitata) is an important vegetable crop widely grown throughout the world, providing plentiful nutrients and health-promoting substances. To facilitate further genetics and genomic studies and crop improvement, we present here a high-quality reference genome for cabbage. We report a de novo genome assembly of the cabbage double-haploid line D134. A combined strategy of single-molecule real-time (SMRT) sequencing, 10× Genomics and chromosome conformation capture (Hi-C) produced a high quality cabbage draft genome. The chromosome-level D134 assembly is 529.92 Mb in size, 135 Mb longer than the current 02-12 reference genome, with scaffold N50 length being raised as high as 38 times. We annotated 44,701 high-quality protein-coding genes, and provided full-length transcripts for 45.59% of the total predicted gene models. Moreover, we identified novel genomic features like underrated TEs, as well as gene families and gene family expansions and contractions during B. oleracea evolution. The D134 draft genome is a cabbage reference genome assembled by SMRT long-read sequencing combined with the 10× Genomics and Hi-C technologies for scaffolding. This high-quality cabbage reference genome provides a valuable tool for improvement of Brassica crops.
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