Evidence map›Paper›PMID 32707444›Full record

ArticleEBioMedicine2020

The utility of a methylation panel in the assessment of clinical response to radiofrequency ablation for Barrett's esophagus.

Wladyslaw Januszewicz, Vinod V Subhash, William Waldock, Daniel I Fernando, Giorgio Bartalucci, Hamza Chettouh, Ahmad Miremadi, Maria O'Donovan, Rebecca C Fitzgerald, Massimiliano di Pietro

Open access · goldAbstract read
In one paragraph

Article in EBioMedicine, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.2field-weighted citation impact, top 46% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 3 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 2 countries.

Wladyslaw JanuszewiczMRC Cancer Unit, Hutchison-MRC Research Centre, University of Cambridge, CB2 0XZ Cambridge, UK; Department of Gastroenterology, Hepatology and Clinical Oncology, Medical Centre for Postgraduate Education, Warsaw, Poland.
Vinod V SubhashMRC Cancer Unit, Hutchison-MRC Research Centre, University of Cambridge, CB2 0XZ Cambridge, UK.
William WaldockMRC Cancer Unit, Hutchison-MRC Research Centre, University of Cambridge, CB2 0XZ Cambridge, UK.
Daniel I FernandoMRC Cancer Unit, Hutchison-MRC Research Centre, University of Cambridge, CB2 0XZ Cambridge, UK.
Giorgio BartalucciMRC Cancer Unit, Hutchison-MRC Research Centre, University of Cambridge, CB2 0XZ Cambridge, UK.
Hamza ChettouhMRC Cancer Unit, Hutchison-MRC Research Centre, University of Cambridge, CB2 0XZ Cambridge, UK.
Ahmad MiremadiDepartment of Histopathology, Addenbrooke's Hospital, Cambridge, United Kingdom.
Maria O'DonovanDepartment of Histopathology, Addenbrooke's Hospital, Cambridge, United Kingdom.
Rebecca C FitzgeraldMRC Cancer Unit, Hutchison-MRC Research Centre, University of Cambridge, CB2 0XZ Cambridge, UK.
Massimiliano di PietroMRC Cancer Unit, Hutchison-MRC Research Centre, University of Cambridge, CB2 0XZ Cambridge, UK. Electronic address: md460@mrc-cu.cam.ac.uk.
University of Cambridge · GBAddenbrooke's Hospital · GB

Funding

Medical Research Council MC_UU_12022/2
6 · The paper itself

Abstract

backgroundRadiofrequency ablation (RFA) is an effective treatment for dysplastic Barrett's esophagus (BE), but recurrence can occur after initial response. Currently there is uncertainty about how to best define histological remission. A DNA methylation panel on esophageal samples was previously shown to have high diagnostic accuracy for BE. We aimed to investigate this biomarker panel in the assessment of response to RFA treatment.

methodsWe retrospectively analyzed esophageal and gastroesophageal junction (GEJ) biopsies from patients with BE before and after RFA treatment. We quantified the extent of intestinal metaplasia (IM) based on number of glands with goblet cells (IM-Score) and expression of the intestinal factor trefoil factor-3 (TFF3-Score). Promoter methylation of 3 genes (ZNF345, TFP12, ZNF569) was measured by methylight (Meth-Score) throughout the RFA treatment pathway.

findingsWe included 45 patients (11 non-dysplastic BE, 14 low-grade dysplasia, 20 high-grade dysplasia/intramucosal cancer). Meth-Scores were significantly higher in BE with and without dysplasia and GEJ with IM compared to GEJ without IM (P<·001). Meth-scores significantly correlated with the extent of IM at the GEJ measured both with IM-Scores (rho=66·0%, P<·001), and TFF3-Scores (rho=75·6%, P<·001). In patients with residual IM at the GEJ, RFA re-treatment brought about a 7·6-fold reduction in the methylation levels. The Meth-score had an area under the ROC curve of 95·1% (95%CI 91·1% - 99·1%) differentiating BE from normal GEJ.

interpretationA DNA methylation panel can discriminate between the extent of histological IM in esophageal and junctional biopsies and could be used to objectively quantify residual disease following RFA.

Indexed as

DNA MethylationAgedBarrett EsophagusBiomarkers, TumorBiopsyCase-Control StudiesDisease ProgressionEpigenesis, GeneticFemaleHumansMaleMiddle AgedRadiofrequency AblationRepressor ProteinsRetrospective StudiesTreatment OutcomeBiomarkers, TumorRepressor ProteinsTFF3 protein, humanTrefoil Factor-3ZNF569 protein, humanBiomarkersEndoscopic therapy, Intestinal metaplasiaMethylationPrecancerous lesions

Identifiers

PMID32707444
PMCPMC7381502
OpenAlexW3044289098

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.