Evidence map›Paper›PMID 32706163›Full record

ArticleCancer medicine2020

Selecting human papillomavirus genotypes to optimize the performance of screening tests among South African women.

Lauren G Johnson, Rakiya Saidu, Zizipho Mbulawa, Anna-Lise Williamson, Rosalind Boa, Ana Tergas, Jennifer Moodley, David Persing, Scott Campbell, Wei-Yann Tsai and 3 more

Open access · goldAbstract read
In one paragraph

Article in Cancer medicine, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed, 1 pooled it
3.2field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 1 synthesis or guideline pooled it, 31 citations in OpenAlex.

  1. Pooled it
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  19. Clinical Utility of Reflex Testing with Cancer Biomarkers to Improve Diagnostic Accuracy of Primary Human Papillomavirus Screening.Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 2 countries.

Lauren G JohnsonDepartment of Epidemiology, Mailman School of Public Health, Columbia University Irving Medical Center, New York, NY, USA.ORCID 0000-0002-4173-3652
Rakiya SaiduDepartment of Obstetrics and Gynecology, University of Cape Town, Cape Town, South Africa.
Zizipho MbulawaSouth African Medical Research Council Gynaecologic Cancer Research Centre (SAMRC GCRC), University of Cape Town, Cape Town, South Africa.
Anna-Lise WilliamsonSouth African Medical Research Council Gynaecologic Cancer Research Centre (SAMRC GCRC), University of Cape Town, Cape Town, South Africa.
Rosalind BoaDepartment of Obstetrics and Gynecology, University of Cape Town, Cape Town, South Africa.
Ana TergasDepartment of Epidemiology, Mailman School of Public Health, Columbia University Irving Medical Center, New York, NY, USA.
Jennifer MoodleySouth African Medical Research Council Gynaecologic Cancer Research Centre (SAMRC GCRC), University of Cape Town, Cape Town, South Africa.
David PersingCepheid, Sunnyvale, CA, USA.
Scott CampbellCepheid, Sunnyvale, CA, USA.ORCID 0000-0003-2528-4997
Wei-Yann TsaiDepartment of Biostatistics, Mailman School of Public Health, Columbia University Irving Medical Center, New York, NY, USA.
Thomas C WrightDepartment of Pathology, Vagelos College of Physicians and Surgeons, Columbia University Irving Medical Center, New York, NY, USA.
Lynette DennyDepartment of Obstetrics and Gynecology, University of Cape Town, Cape Town, South Africa.
Louise KuhnDepartment of Epidemiology, Mailman School of Public Health, Columbia University Irving Medical Center, New York, NY, USA.
Columbia University Irving Medical Center · USSouth African Medical Research Council · ZA3D Technology Laboratories (United States) · USNational Health Laboratory Service · ZA

Funding

Improving specificity of HPV Screen-and-Treat in South AfricaUH3CA189908 · NCI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI KUHN, LOUISE · 2016 to 2018
$2.5M
Training Program in Cancer-related Population SciencesT32CA094061 · NCI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI NEUGUT, ALFRED I., TERRY, MARY BETH · 2017 to 2021
$1.1M
Improving specificity of HPV Screen-and-Treat in South AfricaUH2CA189908 · NCI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI KUHN, LOUISE · 2014 to 2015
$998k
NCI NIH HHS T32 CA094061NCI NIH HHS UH2 CA189908NCI NIH HHS UH3 CA189908
6 · The paper itself

Abstract

Human papillomavirus (HPV) testing is highly sensitive compared to cytology, with the trade-off of being less specific. We investigated whether select combinations of HPV genotypes, ascertained by Linear Array (LA) and Xpert HPV (GX), can optimize sensitivity/specificity trade-offs to detect high-grade cervical intraepithelial neoplasia (CIN2+). In a study in Cape Town, South Africa, 586 women living without and 535 living with HIV, aged 30-65 years, were recruited. Each woman underwent a pelvic exam to collect cervical samples (tested by LA and GX for 14 high-risk HPV genotypes) and underwent colposcopy with histological sampling to determine CIN2+. In multivariable logistic regression of LA results, only HPV genotypes 16, 18, 31, 33, 35, 52, 58 were significantly associated with CIN2+ (P < .05). Xpert includes these seven types along with HPV 45 within three of the test's five channels and we defined these eight types as restricted genotyping (ie 16, 18, 31, 33, 35, 45, 52, 58). Full genotyping was defined as all 14 high-risk types. Sensitivity estimates for full genotyping using LA were similar to that of restricted genotyping: 83.9% (full) vs 79.0% (restricted) in women without HIV and 93.0% (full) vs 88.9% (restricted) in women living with HIV. Specificity estimates improved for restricted vs full genotyping: 87.4% (full) vs 90.8% (restricted) in women without HIV and 63.7% (full) vs 71.4% (restricted) in women living with HIV. To optimize the performance of HPV testing for cervical cancer screening in high-burden, under-resourced settings like South Africa, only HPV 16, 18, 31, 33, 35, 45, 52, 58 could be included to define screen-positive. We recommend the inclusion of HPV45 for its known link to adenocarcinoma.

Indexed as

Early Detection of CancerHuman Papillomavirus DNA TestsAdultAgedCoinfectionFemaleGenotypeHIV InfectionsHumansMiddle AgedNeoplasm GradingPapillomaviridaePapillomavirus InfectionsPredictive Value of TestsReproducibility of ResultsSouth AfricaHPV genotyping assayshuman papillomavirussensitivitySouth Africaspecificity

Identifiers

PMID32706163
PMCPMC7520316
OpenAlexW3044581330

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.