Evidence map›Paper›PMID 32704456›Full record

ArticlePeerJ preprints2018

Journal of Open Source Software (JOSS): design and first-year review.

Arfon M Smith, Kyle E Niemeyer, Daniel S Katz, Lorena A Barba, George Githinji, Melissa Gymrek, Kathryn D Huff, Christopher R Madan, Abigail Cabunoc Mayes, Kevin M Moerman and 6 more

Abstract read
In one paragraph

Article in PeerJ preprints, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Review
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  8. Review
  9. Article
  10. Open collaborative writing with Manubot.PLoS computational biology · 2019
    Article
  11. Article
  12. Article
  13. Article
  14. Article
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  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Arfon M SmithData Science Mission Office, Space Telescope Science Institute, Baltimore, MD, United States of America.
Kyle E NiemeyerSchool of Mechanical, Industrial, and Manufacturing Engineering, Oregon State University, Corvallis, OR, United States of America.
Daniel S KatzNational Center for Supercomputing Applications & Department of Computer Science & Department of Electrical and Computer Engineering & School of Information Sciences, University of Illinois at Urbana-Champaign, Urbana, IL, United States of America.
Lorena A BarbaDepartment of Mechanical & Aerospace Engineering, The George Washington University, Washington, D.C., United States of America.
George GithinjiKEMRI-Wellcome Trust Research Programme, Kilifi, Kenya.
Melissa GymrekDepartments of Medicine & Computer Science and Engineering, University of California, San Diego, La Jolla, CA, United States of America.
Kathryn D HuffDepartment of Nuclear, Plasma, and Radiological Engineering, University of Illinois at Urbana-Champaign, Urbana, IL, United States of America.
Christopher R MadanSchool of Psychology, University of Nottingham, Nottingham, United Kingdom.
Abigail Cabunoc MayesMozilla Foundation, Toronto, Ontario, Canada.
Kevin M MoermanMIT Media Lab, Massachusetts Institute of Technology, Cambridge, MA, United States of America.
Pjotr PrinsUniversity of Tennessee Health Science Center, Memphis, TN, United States of America.
Karthik RamBerkeley Institute for Data Science, University of California, Berkeley, CA, United States of America.
Ariel RokemeScience Institute, University of Washington, Seattle, WA, United States of America.
Tracy K TealData Carpentry, Davis, CA, United States of America.
Roman Valls GuimeraUniversity of Melbourne Centre for Cancer Research, University of Melbourne, Melbourne, Australia.
Jacob T VanderplaseScience Institute, University of Washington, Seattle, WA, United States of America.

Funding

A Unified High Performance Web Service for Systems Genetics and Precision MedicineR01GM123489 · NIGMS · UNIVERSITY OF TENNESSEE HEALTH SCI CTR · PI PRINS, PJOTR, SEN, SAUNAK · 2017 to 2024
$3.7M
Summer Institute in Neuroimaging and Data ScienceR25MH112480 · NIMH · UNIVERSITY OF WASHINGTON · PI Noah C Benson · 2017 to 2026
$1.6M
NIGMS NIH HHS R01 GM123489NIMH NIH HHS R25 MH112480
6 · The paper itself

Abstract

This article describes the motivation, design, and progress of the Journal of Open Source Software (JOSS). JOSS is a free and open-access journal that publishes articles describing research software. It has the dual goals of improving the quality of the software submitted and providing a mechanism for research software developers to receive credit. While designed to work within the current merit system of science, JOSS addresses the dearth of rewards for key contributions to science made in the form of software. JOSS publishes articles that encapsulate scholarship contained in the software itself, and its rigorous peer review targets the software components: functionality, documentation, tests, continuous integration, and the license. A JOSS article contains an abstract describing the purpose and functionality of the software, references, and a link to the software archive. The article is the entry point of a JOSS submission, which encompasses the full set of software artifacts. Submission and review proceed in the open, on GitHub. Editors, reviewers, and authors work collaboratively and openly. Unlike other journals, JOSS does not reject articles requiring major revision; while not yet accepted, articles remain visible and under review until the authors make adequate changes (or withdraw, if unable to meet requirements). Once an article is accepted, JOSS gives it a digital object identifier (DOI), deposits its metadata in Crossref, and the article can begin collecting citations on indexers like Google Scholar and other services. Authors retain copyright of their JOSS article, releasing it under a Creative Commons Attribution 4.0 International License. In its first year, starting in May 2016, JOSS published 111 articles, with more than 40 additional articles under review. JOSS is a sponsored project of the nonprofit organization NumFOCUS and is an affiliate of the Open Source Initiative (OSI).

Indexed as

Code reviewComputational researchData ScienceDigital LibrariesOpen-source softwareResearch softwareScholarly publishingScientific Computing and SimulationSoftware citationSoftware Engineering

Identifiers

PMID32704456
PMCPMC7340488

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.