Evidence map›Paper›PMID 32703999›Full record

ArticleScientific reports2020

Molecular malaria surveillance using a novel protocol for extraction and analysis of nucleic acids retained on used rapid diagnostic tests.

Etienne A Guirou, Tobias Schindler, Salome Hosch, Olivier Tresor Donfack, Charlene Aya Yoboue, Silvan Krähenbühl, Anna Deal, Glenda Cosi, Linda Gondwe, Grace Mwangoka and 13 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.6field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 14 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors at 7 institutions in 3 countries.

Etienne A Guirou *Department of Medical Parasitology and Infection Biology, Swiss Tropical and Public Health Institute, Basel, Switzerland.
Tobias Schindler *Department of Medical Parasitology and Infection Biology, Swiss Tropical and Public Health Institute, Basel, Switzerland. tobias.schindler@swisstph.ch.
Salome HoschDepartment of Medical Parasitology and Infection Biology, Swiss Tropical and Public Health Institute, Basel, Switzerland.
Olivier Tresor DonfackMedical Care Development International, Malabo, Equatorial Guinea.
Charlene Aya YoboueDepartment of Medical Parasitology and Infection Biology, Swiss Tropical and Public Health Institute, Basel, Switzerland.
Silvan KrähenbühlDepartment of Medical Parasitology and Infection Biology, Swiss Tropical and Public Health Institute, Basel, Switzerland.
Anna DealDepartment of Medical Parasitology and Infection Biology, Swiss Tropical and Public Health Institute, Basel, Switzerland.
Glenda CosiDepartment of Medical Parasitology and Infection Biology, Swiss Tropical and Public Health Institute, Basel, Switzerland.
Linda GondweDepartment of Medical Parasitology and Infection Biology, Swiss Tropical and Public Health Institute, Basel, Switzerland.
Grace MwangokaIfakara Health Institute, Bagamoyo Branch, United Republic of Tanzania.
Heavenlight MasukiDepartment of Paediatrics and Child Health, Muhimbili University of Health and Allied Sciences, Dar Es Salaam, Tanzania.
Nahya SalimDepartment of Paediatrics and Child Health, Muhimbili University of Health and Allied Sciences, Dar Es Salaam, Tanzania.
Maxmillian MpinaDepartment of Medical Parasitology and Infection Biology, Swiss Tropical and Public Health Institute, Basel, Switzerland.
Jongo SaidIfakara Health Institute, Bagamoyo Branch, United Republic of Tanzania.
Salim AbdullaIfakara Health Institute, Bagamoyo Branch, United Republic of Tanzania.
Stephen L HoffmanSanaria Inc, Rockville, MD, USA.
Bonifacio Manguire NlavoMarathon EG Production Ltd, Malabo, Equatorial Guinea.
Carl MaasMarathon EG Production Ltd, Malabo, Equatorial Guinea.
Carlos Cortes FallaMedical Care Development International, Malabo, Equatorial Guinea.
Wonder P PhiriMedical Care Development International, Malabo, Equatorial Guinea.
Guillermo A GarciaMedical Care Development International, Malabo, Equatorial Guinea.
Marcel TannerDepartment of Medical Parasitology and Infection Biology, Swiss Tropical and Public Health Institute, Basel, Switzerland.
Claudia DaubenbergerDepartment of Medical Parasitology and Infection Biology, Swiss Tropical and Public Health Institute, Basel, Switzerland. claudia.daubenberger@swisstph.ch.
University of Basel · CHIfakara Health Institute · TZMedical Care Development International · USSwiss Tropical and Public Health Institute · CHMarathon Oil (United States) · USMuhimbili University of Health and Allied Sciences · TZSanaria · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The use of malaria rapid diagnostic tests (RDTs) as a source for nucleic acids that can be analyzed via nucleic acid amplification techniques has several advantages, including minimal amounts of blood, sample collection, simplified storage and shipping conditions at room temperature. We have systematically developed and extensively evaluated a procedure to extract total nucleic acids from used malaria RDTs. The co-extraction of DNA and RNA molecules from small volumes of dried blood retained on the RDTs allows detection and quantification of P. falciparum parasites from asymptomatic patients with parasite densities as low as 1 Pf/µL blood using reverse transcription quantitative PCR. Based on the extraction protocol we have developed the ENAR (Extraction of Nucleic Acids from RDTs) approach; a complete workflow for large-scale molecular malaria surveillance. Using RDTs collected during a malaria indicator survey we demonstrated that ENAR provides a powerful tool to analyze nucleic acids from thousands of RDTs in a standardized and high-throughput manner. We found several, known and new, non-synonymous single nucleotide polymorphisms in the propeller region of the kelch 13 gene among isolates circulating on Bioko Island, Equatorial Guinea.

Indexed as

AdultAnimalsBlood Specimen CollectionDNA, ProtozoanEquatorial GuineaFemaleHumansIslandsMalaria, FalciparumMaleMolecular Diagnostic TechniquesNucleic AcidsParasitesPlasmodium falciparumPolymorphism, Single NucleotideProtozoan ProteinsDNA, ProtozoanNucleic AcidsProtozoan Proteins

Identifiers

PMID32703999
PMCPMC7378824
OpenAlexW3044698071

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.