Evidence map›Paper›PMID 32703943›Full record

ArticleNature communications2020

Mutations in FAM50A suggest that Armfield XLID syndrome is a spliceosomopathy.

Yu-Ri Lee, Kamal Khan, Kim Armfield-Uhas, Sujata Srikanth, Nicola A Thompson, Mercedes Pardo, Lu Yu, Joy W Norris, Yunhui Peng, Karen W Gripp and 26 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 51 papers.

0numbers the graph read from it
0cells of the map it votes in
51citing papers in PubMed
3.3field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

51 citing papers in PubMed, 70 citations in OpenAlex.

  1. Clinical manifestations of Armfield syndrome in females with heterozygous FAM50A variants and skewed X-chromosome inactivation.Neurological sciences : official journal of the Italian Neurological Society and of the Italian Society of Clinical Neurophysiology · 2026
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  10. Pathogenic variants inmedRxiv : the preprint server for health sciences · 2025
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  14. Strabismus in Genetic Syndromes: A Review.Clinical & experimental ophthalmology · 2025
    Review
  15. Article
  16. Article
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  18. Article
  19. Rare disease genomics and precision medicine.Genomics & informatics · 2024
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

36 authors at 15 institutions in 5 countries.

Yu-Ri Lee *Department of Biology, Chungnam National University, Daejeon, Korea.ORCID http://orcid.org/0000-0003-1365-8680
Kamal Khan *Center for Human Disease Modeling, Duke University Medical Center, Durham, NC, USA.
Kim Armfield-Uhas *Children's Healthcare of Atlanta, Atlanta, GA, USA.
Sujata Srikanth *Greenwood Genetic Center, Greenwood, SC, USA.
Nicola A ThompsonWellcome Sanger Institute, Hinxton, Cambridge, UK.
Mercedes PardoChester Beatty Laboratories, Institute of Cancer Research, London, UK.ORCID http://orcid.org/0000-0002-3477-9695
Lu YuChester Beatty Laboratories, Institute of Cancer Research, London, UK.ORCID http://orcid.org/0000-0001-8378-9112
Joy W NorrisGreenwood Genetic Center, Greenwood, SC, USA.ORCID http://orcid.org/0000-0002-0852-6870
Yunhui PengDepartment of Physics, Clemson University, Clemson, SC, USA.ORCID http://orcid.org/0000-0001-9768-4127
Karen W GrippDivision of Medical Genetics, A. I. duPont Hospital for Children, Wilmington, DE, USA.ORCID http://orcid.org/0000-0001-8200-1733
Kirk A AleckGenetics and Metabolism, Phoenix Children's Medical Group, Phoenix, AZ, USA.
Chumei LiClinical Genetics Program, McMaster University Medical Center, Hamilton, ON, Canada.
Ed SpenceDivision of Pediatric Genetics and Metabolism, University of North Carolina School of Medicine, Chapel Hill, NC, USA.
Tae-Ik ChoiDepartment of Biology, Chungnam National University, Daejeon, Korea.ORCID http://orcid.org/0000-0003-2667-3804
Soo Jeong KwonDepartment of Microbiology and Molecular Biology, Chungnam National University, Daejeon, Korea.ORCID http://orcid.org/0000-0002-0623-6220
Hee-Moon ParkDepartment of Microbiology and Molecular Biology, Chungnam National University, Daejeon, Korea.
Daseuli YuDepartment of Biological Sciences, Korea Advanced Institute of Science and Technology, Daejeon, Korea.ORCID http://orcid.org/0000-0001-6317-8875
Won Do HeoDepartment of Biological Sciences, Korea Advanced Institute of Science and Technology, Daejeon, Korea.ORCID http://orcid.org/0000-0001-7541-7319
Marie R MooneyCenter for Human Disease Modeling, Duke University Medical Center, Durham, NC, USA.ORCID http://orcid.org/0000-0003-3254-5139
Shahid M BaigHuman Molecular Genetics Laboratory, Health Biotechnology Division, National Institute for Biotechnology and Genetic Engineering (NIBGE), Faisalabad, Pakistan.
Ingrid M WentzensenGeneDx Inc, Gaithersburg, MD, USA.
Aida TelegrafiGeneDx Inc, Gaithersburg, MD, USA.
Kirsty McWalterGeneDx Inc, Gaithersburg, MD, USA.ORCID http://orcid.org/0000-0002-1654-9036
Trevor MorelandGreenwood Genetic Center, Greenwood, SC, USA.ORCID http://orcid.org/0000-0001-9134-0147
Chelsea RoadhouseClinical Genetics Program, McMaster University Medical Center, Hamilton, ON, Canada.
Keri RamseyCenter for Rare Childhood Disorders, TGen, Phoenix, AZ, USA.
Michael J LyonsGreenwood Genetic Center, Greenwood, SC, USA.ORCID http://orcid.org/0000-0002-8644-5507
Cindy SkinnerGreenwood Genetic Center, Greenwood, SC, USA.
Emil AlexovDepartment of Physics, Clemson University, Clemson, SC, USA.
Nicholas KatsanisCenter for Human Disease Modeling, Duke University Medical Center, Durham, NC, USA.
Roger E StevensonGreenwood Genetic Center, Greenwood, SC, USA.ORCID http://orcid.org/0000-0002-1806-6345
Jyoti S ChoudharyChester Beatty Laboratories, Institute of Cancer Research, London, UK.ORCID http://orcid.org/0000-0003-0881-5477
David J AdamsWellcome Sanger Institute, Hinxton, Cambridge, UK.ORCID http://orcid.org/0000-0001-9490-0306
Cheol-Hee KimDepartment of Biology, Chungnam National University, Daejeon, Korea. zebrakim@cnu.ac.kr.ORCID http://orcid.org/0000-0002-3019-0699
Erica E DavisCenter for Human Disease Modeling, Duke University Medical Center, Durham, NC, USA. eridavis@luriechildrens.org.ORCID http://orcid.org/0000-0002-2412-8397
Charles E SchwartzGreenwood Genetic Center, Greenwood, SC, USA. ceschwartz@ggc.org.ORCID http://orcid.org/0000-0002-7770-1943
Greenwood Genetic Center · USChungnam National University · KRInstitute of Cancer Research · GBClemson University · USKorea Advanced Institute of Science and Technology · KRLurie Children's Hospital · USMcMaster University Medical Centre · CANorthwestern University · USWellcome Sanger Institute · GBChildren's Healthcare of Atlanta · USCommunity Health Systems - Dupont Hospital · USNational Institute for Biotechnology and Genetic Engineering · PKPhoenix Children's Hospital · USTranslational Genomics Research Institute · USUniversity of North Carolina at Chapel Hill · US

Funding

Functional Dissection of CNVs in Neurodevelopmental TraitsR01MH106826 · NIMH · LURIE CHILDREN'S HOSPITAL OF CHICAGO · PI DAVIS, ERICA ELLEN · 2015 to 2025
$4.6M
New Generation DelPhi: large systems and beyond electrostaticsR01GM093937 · NIGMS · CLEMSON UNIVERSITY · PI ALEXOV, EMIL GEORGIEV · 2010 to 2023
$4.3M
Preparing Genetic Counselors for Genomic Medicine ResearchT32HG008955 · NHGRI · DUKE UNIVERSITY · PI COONEY, KATHLEEN A, HAGA, SUSANNE · 2017 to 2021
$2.0M
Identification of Novel X-linked Intellectual Disability GenesR01NS073854 · NINDS · GREENWOOD GENETIC CENTER · PI SCHWARTZ, CHARLES E, WANG, TAO · 2011 to 2013
$1.4M
Cancer Research UK C309/A25144NHGRI NIH HHS T32 HG008955NIGMS NIH HHS R01 GM093937NIMH NIH HHS R01 MH106826NINDS NIH HHS R01 NS073854
6 · The paper itself

Abstract

Intellectual disability (ID) is a heterogeneous clinical entity and includes an excess of males who harbor variants on the X-chromosome (XLID). We report rare FAM50A missense variants in the original Armfield XLID syndrome family localized in Xq28 and four additional unrelated males with overlapping features. Our fam50a knockout (KO) zebrafish model exhibits abnormal neurogenesis and craniofacial patterning, and in vivo complementation assays indicate that the patient-derived variants are hypomorphic. RNA sequencing analysis from fam50a KO zebrafish show dysregulation of the transcriptome, with augmented spliceosome mRNAs and depletion of transcripts involved in neurodevelopment. Zebrafish RNA-seq datasets show a preponderance of 3' alternative splicing events in fam50a KO, suggesting a role in the spliceosome C complex. These data are supported with transcriptomic signatures from cell lines derived from affected individuals and FAM50A protein-protein interaction data. In sum, Armfield XLID syndrome is a spliceosomopathy associated with aberrant mRNA processing during development.

Indexed as

AdultAnimalsCell NucleusChildChild, PreschoolDNA-Binding ProteinsFamilyFemaleGene Expression Regulation, DevelopmentalHumansIntellectual DisabilityMaleMiceMutationMutation, MissenseNIH 3T3 CellsDNA-Binding ProteinsFAM50A protein, humanfam50a protein, zebrafishRNA-Binding ProteinsRNA, MessengerRNA, Small NuclearU5 small nuclear RNAZebrafish Proteins

Identifiers

PMID32703943
PMCPMC7378245
OpenAlexW3045170349

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.