Evidence map›Paper›PMID 32702737›Full record

ArticleResearch square2020

B cell clonal expansion and convergent antibody responses to SARS-CoV-2.

Sandra C A Nielsen, Fan Yang, Ramona A Hoh, Katherine J L Jackson, Katharina Roeltgen, Ji-Yeun Lee, Arjun Rustagi, Angela J Rogers, Abigail E Powell, Peter S Kim and 4 more

Open access · greenAbstract readPreprint
In one paragraph

Article in Research square, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 32 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

14 authors at 2 institutions in 2 countries.

Sandra C A NielsenDepartment of Pathology, Stanford University.
Fan YangDepartment of Pathology, Stanford University.
Ramona A HohDepartment of Pathology, Stanford University.
Katherine J L JacksonGarvan Institute of Medical Research.
Katharina RoeltgenDepartment of Pathology, Stanford University.
Ji-Yeun LeeDepartment of Pathology, Stanford University.
Arjun RustagiDepartment of Medicine, Division of Infectious Diseases and Geographic Medicine, Stanford University.
Angela J RogersDepartment of Medicine, Division of Pulmonary, Allergy and Critical Care Medicine, Stanford University.
Abigail E PowellStanford ChEM-H and Department of Biochemistry, Stanford University.
Peter S KimStanford ChEM-H and Department of Biochemistry, Stanford University.
Taia T WangDepartment of Medicine, Division of Infectious Diseases and Geographic Medicine, Stanford University.
Benjamin PinskyDepartment of Pathology, Stanford University.
Catherine A BlishDepartment of Medicine, Division of Infectious Diseases and Geographic Medicine, Stanford University.
Scott D BoydDepartment of Pathology, Stanford University.
Stanford University · USGarvan Institute of Medical Research · AU

Funding

Understanding B cell memory in response to diverse virus infectionsU19AI111825 · NIAID · ROCKEFELLER UNIVERSITY · PI RAVETCH, JEFFREY VICTOR · 2014 to 2023
$26.0M
EMERGING INFECTIOUS DISEASEST32AI007502 · NIAID · STANFORD UNIVERSITY · PI Prasanna Jagannathan, DAVID A. RELMAN · 1995 to 2026
$6.8M
Effects of aging on primary and secondary vaccine responses in a 15-year longitudinal cohortR01AI130398 · NIAID · STANFORD UNIVERSITY · PI BOYD, SCOTT DEXTER · 2017 to 2021
$4.0M
Regulation of the IgG Fc domain repertoireR01AI139119 · NIAID · STANFORD UNIVERSITY · PI WANG, TAIA · 2019 to 2023
$2.8M
Storage and recall of human B cell memory of influenza over tissues and timeR01AI127877 · NIAID · STANFORD UNIVERSITY · PI BOYD, SCOTT DEXTER · 2017 to 2021
$2.0M
Metabolic derangements in ARDSK23HL125663 · NHLBI · STANFORD UNIVERSITY · PI ROGERS, ANGELA J · 2015 to 2018
$744k
NHLBI NIH HHS K23 HL125663NIAID NIH HHS R01 AI127877NIAID NIH HHS R01 AI130398NIAID NIH HHS R01 AI139119NIAID NIH HHS T32 AI007502NIAID NIH HHS U19 AI111825
6 · The paper itself

Abstract

During virus infection B cells are critical for the production of antibodies and protective immunity. Establishment of a diverse antibody repertoire occurs by rearrangement of germline DNA at the immunoglobulin heavy and light chain loci to encode the membrane-bound form of antibodies, the B cell antigen receptor. Little is known about the B cells and antigen receptors stimulated by the novel human coronavirus SARS-CoV-2. Here we show that the human B cell compartment in patients with diagnostically confirmed SARS-CoV-2 and clinical COVID-19 is rapidly altered with the early recruitment of B cells expressing a limited subset of V genes, and extensive activation of IgG and IgA subclasses without significant somatic mutation. We detect expansion of B cell clones as well as convergent antibodies with highly similar sequences across SARS-CoV-2 patients, highlighting stereotyped naïve responses to this virus. A shared convergent B cell clonotype in SARS-CoV-2 infected patients was previously seen in patients with SARS. These findings offer molecular insights into shared features of human B cell responses to SARS-CoV-2 and other zoonotic spillover coronaviruses.

Indexed as

antigen receptorsB cellsSARS-CoV-2

Identifiers

PMID32702737
PMCPMC7336706
OpenAlexW3048610589

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.