Evidence map›Paper›PMID 32702016›Full record

ArticlePLoS computational biology2020

A framework to assess the quality and impact of bioinformatics training across ELIXIR.

Kim T Gurwitz, Prakash Singh Gaur, Louisa J Bellis, Lee Larcombe, Eva Alloza, Balint Laszlo Balint, Alexander Botzki, Jure Dimec, Victoria Dominguez Del Angel, Pedro L Fernandes and 20 more

Abstract read
In one paragraph

Article in PLoS computational biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

30 authors.

Kim T GurwitzDepartment of Genetics, University of Cambridge, Cambridge, United Kingdom.ORCID 0000-0003-1992-5073
Prakash Singh GaurEMBL-EBI, Wellcome Genome Campus, Hinxton, Cambridge, United Kingdom.ORCID 0000-0003-3272-628X
Louisa J BellisDepartment of Genetics, University of Cambridge, Cambridge, United Kingdom.ORCID 0000-0001-9581-870X
Lee LarcombeMRC Human Genetics Unit, The Institute of Genetics and Molecular Medicine, University of Edinburgh, Edinburgh, United Kingdom.ORCID 0000-0003-3150-6445
Eva AllozaBarcelona Supercomputing Center (BSC), INB Coordination node, Life Sciences Department, Barcelona, Spain.ORCID 0000-0001-8385-9336
Balint Laszlo BalintUniversity of Debrecen, Medical Faculty, Department of Biochemistry and Molecular Biology, Debrecen, Hungary.
Alexander BotzkiVIB Flanders Institute for Biotechnology, VIB Bioinformatics Core, Ghent, Belgium.ORCID 0000-0001-6691-4233
Jure DimecFaculty of Medicine, Institute for Biostatistics and Medical Informatics (IBMI), University of Ljubljana, Ljubljana, Slovenia.ORCID 0000-0002-9525-9028
Victoria Dominguez Del AngelIFB-URGI, Université Paris-Saclay, Centre de Recherche INRA, Versailles, France.ORCID 0000-0002-5514-6651
Pedro L FernandesInstituto Gulbenkian de Ciência, Oeiras, Portugal.ORCID 0000-0003-2124-0241
Eija KorpelainenCSC - IT Center for Science Ltd, Espoo, Finland.
Roland KrauseLuxembourg Centre for Systems Biomedicine, University of Luxembourg, Esch-sur-Alzette, Luxembourg.ORCID 0000-0001-9938-7126
Mateusz KuzakDTL Dutch Techcentre for Life Sciences, Utrecht, the Netherlands.ORCID 0000-0003-0087-6021
Loredana Le PeraInstitute of Biomembranes, Bioenergetics and Molecular Biotechnologies (IBIOM), National Research Council of Italy (CNR), Bari, Italy.ORCID 0000-0002-0076-9878
Brane LeskošekFaculty of Medicine, Institute for Biostatistics and Medical Informatics (IBMI), University of Ljubljana, Ljubljana, Slovenia.ORCID 0000-0001-5202-2349
Jessica M LindvallNational Bioinformatics Infrastructure Sweden (NBIS), Science for Life Laboratory, Department of Biochemistry and Biophysics, Stockholm University, Stockholm, Sweden.ORCID 0000-0002-5042-8481
Diana MarekSIB Training, SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland.ORCID 0000-0002-9812-6351
Paula A MartinezVIB Flanders Institute for Biotechnology, VIB Bioinformatics Core, Ghent, Belgium.ORCID 0000-0002-8990-1985
Tuur MuyldermansVIB Flanders Institute for Biotechnology, VIB Bioinformatics Core, Ghent, Belgium.ORCID 0000-0002-3926-7293
Ståle NygårdDepartment of Informatics, University of Oslo, Oslo, Norway.
Patricia M PalagiSIB Training, SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland.ORCID 0000-0001-9062-6303
Hedi PetersonInstitute of Computer Science, University of Tartu, Tartu, Estonia.ORCID 0000-0001-9951-5116
Fotis PsomopoulosInstitute of Applied Biosciences (INAB), Center for Research and Technology Hellas (CERTH), Thessaloniki, Greece.ORCID 0000-0002-0222-4273
Vojtech SpiwokDepartment of Biochemistry and Microbiology, University of Chemistry and Technology, Prague, Czech Republic.ORCID 0000-0001-8108-2033
Celia W G van GelderDTL Dutch Techcentre for Life Sciences, Utrecht, the Netherlands.ORCID 0000-0002-0223-2329
Allegra ViaInstitute of Molecular Biology and Pathology (IBPM), National Research Council of Italy (CNR), Rome, Italy.
Marko VidakFaculty of Medicine, Institute for Biostatistics and Medical Informatics (IBMI), University of Ljubljana, Ljubljana, Slovenia.ORCID 0000-0001-7901-3936
Daniel WibbergGenome Research of Industrial Microorganisms, Center for Biotechnology, Bielefeld University, Bielefeld, Germany.ORCID 0000-0002-1331-4311
Sarah L MorganEMBL-EBI, Wellcome Genome Campus, Hinxton, Cambridge, United Kingdom.ORCID 0000-0001-9528-8323
Gabriella RusticiDepartment of Genetics, University of Cambridge, Cambridge, United Kingdom.ORCID 0000-0003-3085-1271

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

ELIXIR is a pan-European intergovernmental organisation for life science that aims to coordinate bioinformatics resources in a single infrastructure across Europe; bioinformatics training is central to its strategy, which aims to develop a training community that spans all ELIXIR member states. In an evidence-based approach for strengthening bioinformatics training programmes across Europe, the ELIXIR Training Platform, led by the ELIXIR EXCELERATE Quality and Impact Assessment Subtask in collaboration with the ELIXIR Training Coordinators Group, has implemented an assessment strategy to measure quality and impact of its entire training portfolio. Here, we present ELIXIR's framework for assessing training quality and impact, which includes the following: specifying assessment aims, determining what data to collect in order to address these aims, and our strategy for centralised data collection to allow for ELIXIR-wide analyses. In addition, we present an overview of the ELIXIR training data collected over the past 4 years. We highlight the importance of a coordinated and consistent data collection approach and the relevance of defining specific metrics and answer scales for consortium-wide analyses as well as for comparison of data across iterations of the same course.

Indexed as

Quality ControlAlgorithmsBiomedical ResearchComputational BiologyCurriculumDatabases, FactualData CollectionEducation, ContinuingEuropeProgram EvaluationReproducibility of ResultsSoftwareUser-Computer Interface

Identifiers

PMID32702016
PMCPMC7377377

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.