Evidence map›Paper›PMID 32701912›Full record

ArticleActa bio-medica : Atenei Parmensis2020

Virological surveillance of SARS-CoV-2 in an Italian northern area: comparison of Real Time RT PCR cycle threshold (Ct) values in three epidemic periods.

Licia Veronesi, Maria Eugenia Colucci, Cesira Pasquarella, Luca Caruso, Mostafa Mohieldin Mahgoub Ibrahim, Roberta Zoni, Massimiliano Pergreffi, Carlo Arcuri, Chiara Seidenari, Isabella Viani and 3 more

Abstract readComparative Study
In one paragraph

Article in Acta bio-medica : Atenei Parmensis, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. COVID-19 pandemic: Impact on gestational diabetes mellitus prevalence.Diabetes research and clinical practice · 2022
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Infection sustained by lineage B.1.1.7 of SARS-CoV-2 is characterised by longer persistence and higher viral RNA loads in nasopharyngeal swabs.International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases · 2021
    Article
  10. Article
  11. Article
  12. Article
  13. SARS-CoV-2/COVID-19 Testing: The Tower of Babel.Acta bio-medica : Atenei Parmensis · 2020
    Article
  14. The identity of public health in COVID-19 times.Acta bio-medica : Atenei Parmensis · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Licia VeronesiDepartment S.Bi.Bi.T, University of Parma. licia.veronesi@unipr.it.
Maria Eugenia ColucciDepartment of Medicine and Surgery, University of Parma, Italy. mariaeugenia.colucci@unipr.it.
Cesira PasquarellaDepartment of Medicine and Surgery, University of Parma, Italy. cesira.pasquarella@unipr.it.
Luca CarusoDepartment of Medicine and Surgery, University of Parma, Italy. luca10.caruso@gmail.com.
Mostafa Mohieldin Mahgoub IbrahimDepartment of Medicine and Surgery, University of Parma, Italy. mostafa.mohieldinmahgoubibrahim@unipr.it.
Roberta ZoniDepartment of Medicine and Surgery, University of Parma, Italy. roberta.zoni@unipr.it.
Massimiliano PergreffiDepartment of Medicine and Surgery, University of Parma, Italy. massimiliano.pergreffi@unipr.it.
Carlo ArcuriDepartment of Medicine and Surgery, University of Parma, Italy. carlo.arcuri@unipr.it.
Chiara SeidenariDepartment of Medicine and Surgery, University of Parma, Italy. chiara.seidenari@unipr.it.
Isabella VianiDepartment of Medicine and Surgery, University of Parma, Italy. isabella.viani@unipr.it.
Emanuela CapobiancoDepartment of Medicine and Surgery, University of Parma, Italy. emanuela.capobianco@unipr.it.
Sandra MezzettaDepartment of Medicine and Surgery, University of Parma, Italy. sandra.mezzetta@unipr.it.
Paola AffanniDepartment of Medicine and Surgery, University of Parma, Italy. paola.affanni@unipr.it.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Aim of the study was to investigate the differences in Ct values in nasopharingeal swabs collected in three SARS-CoV-2 epidemic periods: first one from February 23 to March 25 (14 days from lockdown started on March 11); the second one from  March  26 to May 18 (14 days  from the end of strict lockdown on May 4) and the third one from May 19 until June 15. Viral RNA was detected in nasopharyngeal swabs obtained both from inpatients and outpatients. COVID-19 infection was confirmed according to the Ct values for N1 and N2 genes ascertained by Real-Time RT-PCR assay as described by the CDC. We calculated the prevalence of nasopharyngeal swabs tested positive for SARS-CoV-2, the mean and median of the Cts and the percentage of samples equal or below the Ct value of 25 in the 3 periods considered. The average value of Ct increased, going from 24.80 in the first epidemic period to 26.64 in the second period to 28.50 in the third period (p <0.001). The percentage of samples with Ct lower than or equal to 25 also decreased sharply from 54.7% to 20.0%. These findings need to be integrated with epidemiological and clinical data.

Indexed as

BetacoronavirusCoronavirus InfectionsCOVID-19HumansNasopharynxPandemicsPneumonia, ViralReal-Time Polymerase Chain ReactionRNA, ViralSARS-CoV-2RNA, Viral

Identifiers

PMID32701912
PMCPMC8023099

What OpenQuestion holds

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LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.