Evidence map›Paper›PMID 32699268›Full record

ArticleCommunications biology2020

Post-transcriptional air pollution oxidation to the cholesterol biosynthesis pathway promotes pulmonary stress phenotypes.

Juan C Gonzalez-Rivera, Kevin C Baldridge, Dongyu S Wang, Kanan Patel, Jamie C L Chuvalo-Abraham, Lea Hildebrandt Ruiz, Lydia M Contreras

Open access · goldAbstract read
In one paragraph

Article in Communications biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 35 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Selective 8-oxo-rG stalling occurs in the catalytic core of polynucleotide phosphorylase (PNPase) during degradation.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  5. Mapping the future of oxidative RNA damage in neurodegeneration: Rethinking the status quo with new tools.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Polymorphism ofIBRO neuroscience reports · 2023
    Article
  11. Review
  12. Review
  13. Article
  14. Article
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  16. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Juan C Gonzalez-RiveraMcKetta Department of Chemical Engineering, University of Texas at Austin, 200 East Dean Keeton Street, Stop C0400, Austin, TX, 78712, USA.
Kevin C BaldridgeMcKetta Department of Chemical Engineering, University of Texas at Austin, 200 East Dean Keeton Street, Stop C0400, Austin, TX, 78712, USA.ORCID http://orcid.org/0000-0003-1829-7714
Dongyu S WangMcKetta Department of Chemical Engineering, University of Texas at Austin, 200 East Dean Keeton Street, Stop C0400, Austin, TX, 78712, USA.
Kanan PatelMcKetta Department of Chemical Engineering, University of Texas at Austin, 200 East Dean Keeton Street, Stop C0400, Austin, TX, 78712, USA.
Jamie C L Chuvalo-AbrahamMcKetta Department of Chemical Engineering, University of Texas at Austin, 200 East Dean Keeton Street, Stop C0400, Austin, TX, 78712, USA.
Lea Hildebrandt RuizMcKetta Department of Chemical Engineering, University of Texas at Austin, 200 East Dean Keeton Street, Stop C0400, Austin, TX, 78712, USA.ORCID http://orcid.org/0000-0001-8378-1882
Lydia M ContrerasMcKetta Department of Chemical Engineering, University of Texas at Austin, 200 East Dean Keeton Street, Stop C0400, Austin, TX, 78712, USA. lcontrer@che.utexas.edu.ORCID http://orcid.org/0000-0001-5010-5511
The University of Texas at Austin · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The impact of environmentally-induced chemical changes in RNA has been fairly unexplored. Air pollution induces oxidative modifications such as 8-oxo-7,8-dihydroguanine (8-oxoG) in RNAs of lung cells, which could be associated with premature lung dysfunction. We develop a method for 8-oxoG profiling using immunocapturing and RNA sequencing. We find 42 oxidized transcripts in bronchial epithelial BEAS-2B cells exposed to two air pollution mixtures that recreate urban atmospheres. We show that the FDFT1 transcript in the cholesterol biosynthesis pathway is susceptible to air pollution-induced oxidation. This process leads to decreased transcript and protein expression of FDFT1, and reduced cholesterol synthesis in cells exposed to air pollution. Knockdown of FDFT1 replicates alterations seen in air pollution exposure such as transformed cell size and suppressed cytoskeleton organization. Our results argue of a possible novel biomarker and of an unseen mechanism by which air pollution selectively modifies key metabolic-related transcripts facilitating cell phenotypes in bronchial dysfunction.

Indexed as

Air PollutantsAir PollutionBronchiCell LineCholesterolEpithelial CellsGuanineHigh-Throughput Screening AssaysHumansLungLung DiseasesOxidation-ReductionParticulate MatterRNA Processing, Post-TranscriptionalSignal TransductionTranscriptome7,8-dihydro-8-oxoguanineAir PollutantsCholesterolGuanineParticulate Matter

Identifiers

PMID32699268
PMCPMC7376215
OpenAlexW3045176127

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.