Evidence map›Paper›PMID 32699241›Full record

ArticleScientific reports2020

Two-omics data revealed commonalities and differences between Rpv12- and Rpv3-mediated resistance in grapevine.

Giulia Chitarrini, Samantha Riccadonna, Luca Zulini, Antonella Vecchione, Marco Stefanini, Simone Larger, Massimo Pindo, Alessandro Cestaro, Pietro Franceschi, Gabriele Magris and 4 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
5.3field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 31 citations in OpenAlex.

  1. Article
  2. Plants (Basel, Switzerland) · 2024
    Article
  3. Article
  4. Article
  5. Article
  6. Phased grapevine genome sequence of anFrontiers in plant science · 2023
    Article
  7. Pathogen Adaptation to American (Plants (Basel, Switzerland) · 2022
    Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Fungal-Metal Interactions: A Review of Toxicity and Homeostasis.Journal of fungi (Basel, Switzerland) · 2021
    Review
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 3 institutions in 1 country.

Giulia ChitarriniResearch and Innovation Centre, Fondazione Edmund Mach, via E. Mach 1, 38010, San Michele all'Adige, Italy.
Samantha RiccadonnaResearch and Innovation Centre, Fondazione Edmund Mach, via E. Mach 1, 38010, San Michele all'Adige, Italy.
Luca ZuliniResearch and Innovation Centre, Fondazione Edmund Mach, via E. Mach 1, 38010, San Michele all'Adige, Italy.
Antonella VecchioneResearch and Innovation Centre, Fondazione Edmund Mach, via E. Mach 1, 38010, San Michele all'Adige, Italy.
Marco StefaniniResearch and Innovation Centre, Fondazione Edmund Mach, via E. Mach 1, 38010, San Michele all'Adige, Italy.
Simone LargerResearch and Innovation Centre, Fondazione Edmund Mach, via E. Mach 1, 38010, San Michele all'Adige, Italy.
Massimo PindoResearch and Innovation Centre, Fondazione Edmund Mach, via E. Mach 1, 38010, San Michele all'Adige, Italy.
Alessandro CestaroResearch and Innovation Centre, Fondazione Edmund Mach, via E. Mach 1, 38010, San Michele all'Adige, Italy.
Pietro FranceschiResearch and Innovation Centre, Fondazione Edmund Mach, via E. Mach 1, 38010, San Michele all'Adige, Italy.
Gabriele MagrisDipartimento di Scienze Agroalimentari, Ambientali e Animali, Università di Udine, via delle Scienze 208, 33100, Udine, Italy.
Serena ForiaDipartimento di Scienze Agroalimentari, Ambientali e Animali, Università di Udine, via delle Scienze 208, 33100, Udine, Italy.
Michele MorganteDipartimento di Scienze Agroalimentari, Ambientali e Animali, Università di Udine, via delle Scienze 208, 33100, Udine, Italy.
Gabriele Di GasperoIstituto di Genomica Applicata, via Jacopo Linussio 51, 33100, Udine, Italy. digaspero@appliedgenomics.org.
Urska VrhovsekResearch and Innovation Centre, Fondazione Edmund Mach, via E. Mach 1, 38010, San Michele all'Adige, Italy. urska.vrhovsek@fmach.it.
Fondazione Edmund Mach · ITIstituto di Genomica Applicata · ITUniversity of Udine · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Plasmopara viticola is the causal agent of grapevine downy mildew (DM). DM resistant varieties deploy effector-triggered immunity (ETI) to inhibit pathogen growth, which is activated by major resistance loci, the most common of which are Rpv3 and Rpv12. We previously showed that a quick metabolome response lies behind the ETI conferred by Rpv3 TIR-NB-LRR genes. Here we used a grape variety operating Rpv12-mediated ETI, which is conferred by an independent locus containing CC-NB-LRR genes, to investigate the defence response using GC/MS, UPLC, UHPLC and RNA-Seq analyses. Eighty-eight metabolites showed significantly different concentration and 432 genes showed differential expression between inoculated resistant leaves and controls. Most metabolite changes in sugars, fatty acids and phenols were similar in timing and direction to those observed in Rpv3-mediated ETI but some of them were stronger or more persistent. Activators, elicitors and signal transducers for the formation of reactive oxygen species were early observed in samples undergoing Rpv12-mediated ETI and were paralleled and followed by the upregulation of genes belonging to ontology categories associated with salicylic acid signalling, signal transduction, WRKY transcription factors and synthesis of PR-1, PR-2, PR-5 pathogenesis-related proteins.

Indexed as

GenomicsDatabases, GeneticDisease ResistanceGas Chromatography-Mass SpectrometryGene Expression Regulation, PlantMetabolomePeronosporaPlant DiseasesPlant LeavesPlant ProteinsPrincipal Component AnalysisRNA, PlantRNA-SeqVitisPlant ProteinsRNA, Plant

Identifiers

PMID32699241
PMCPMC7376207
OpenAlexW3044491624

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.