Evidence map›Paper›PMID 32698866›Full record

ArticleBMC veterinary research2020

Sequence analysis and pathogenicity of Avian Orthoavulavirus 1 strains isolated from poultry flocks during 2015-2019.

Hatem S Abd El-Hamid, Manal E Shafi, Najah M Albaqami, Hany F Ellakany, Naglaa M Abdelaziz, Mohamed N Abdelaziz, Mohamed E Abd El-Hack, Ayman E Taha, Khalid M Alanazi, Ahmed R Elbestawy

Open access · goldAbstract read
In one paragraph

Article in BMC veterinary research, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
2.2field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 32 citations in OpenAlex.

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  18. AvianFrontiers in veterinary science · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 2 countries.

Hatem S Abd El-HamidDepartment of Poultry and Fish Diseases, Faculty of Veterinary Medicine, Damanhour University, Damanhour, El Beheira, 22511, Egypt.
Manal E ShafiDepartment of Biological Sciences, Zoology, King Abdulaziz University, Jeddah, 21589, Saudi Arabia.
Najah M AlbaqamiDepartment of Biological Sciences, Zoology, King Abdulaziz University, Jeddah, 21589, Saudi Arabia.
Hany F EllakanyDepartment of Poultry and Fish Diseases, Faculty of Veterinary Medicine, Damanhour University, Damanhour, El Beheira, 22511, Egypt. ellakany_hany@vetmed.dmu.edu.eg.
Naglaa M AbdelazizReference Laboratory for veterinary Quality control on Poultry production (RLQP), Animal Health Research Institute, ARC, El Dokky, Giza, Egypt.
Mohamed N AbdelazizReference Laboratory for veterinary Quality control on Poultry production (RLQP), Animal Health Research Institute, ARC, El Dokky, Giza, Egypt.
Mohamed E Abd El-HackDepartment of Poultry, Faculty of Agriculture, Zagazig University, Zagazig, 44511, Egypt. dr.mohamed.e.abdalhaq@gmail.com.ORCID http://orcid.org/0000-0002-2831-8534
Ayman E TahaDepartment of Animal Husbandry and Animal Wealth Development, Faculty of Veterinary Medicine, Alexandria University, Edfina, 22758, Egypt.
Khalid M AlanaziZoology Department, College of Science, King Saud University, P.O. Box 2455, Riyadh, 11451, Saudi Arabia.
Ahmed R ElbestawyDepartment of Poultry and Fish Diseases, Faculty of Veterinary Medicine, Damanhour University, Damanhour, El Beheira, 22511, Egypt.ORCID http://orcid.org/0000-0002-1272-153X
Damanhour University · EGKing Abdulaziz University · SAAlexandria University · EGKing Saud University · SAZagazig University · EG

Funding

King Abdulaziz University Deanship of Scientific Research (DSR) at King Abdulaziz University
6 · The paper itself

Abstract

backgroundNewcastle disease (ND) causes severe economic losses in poultry industry worldwide. Egyptian poultry industry suffered from severe economic losses since the isolation of Velogenic Newcastle disease virus (vNDV) genotype VIId in 2011 and up till now despite the use of different vaccination programs. So, this study aimed to isolate and characterize the vNDV from a total of 120 poultry flocks from ten provinces in the Egyptian Delta region with a history of respiratory manifestation, high mortalities or a decrease in egg production between 2015 and 2019. Seventy-three samples' allantoic fluid (73/120, 60.8%) were positive for hemagglutination with chicken RBCs. These samples were submitted to molecular examination using qRT-PCR specific primers for AOAV-1, highly pathogenic avian influenza (HPAI-H5), low pathogenic avian influenza (LPAI-H9) and infectious bronchitis virus (IBV).

resultsFifty samples (50/120: 41.6%) were confirmed positive for AOAV-1, based on genetic analysis of matrix and fusion protein. The co-infection rate of other respiratory viral diseases examined was 1.6, 14.1, and 4.1%, for HPAI-H5, LPAI-H9, and IBV, respectively. Biologically, the intracerebral pathogenicity index of ten selected AOAV-1 isolates ranged from 1.70 to 1.98, which indicated the velogenic nature of these isolates. All the sixteen sequenced isolates were AOAV-1 genotype VII.1.1. The full F gene sequence of six examined AOAV-1 VII.1.1 isolates contained the seven neutralizing epitopes, and the glycosylation motif of six-potential sites for N linked glycosylation at residues 85, 191, 366, 447, 471, and 541.

conclusionIt could be concluded that the high prevalence of AOAV-1 genotype VII.1.1 in the Egyptian chicken flocks despite the intensive vaccination with live and killed ND vaccines, as all the 16 isolates tested were belonged to this genotype. Homologous vaccination is badly needed to control and reduce the spread of AOAV-1 genotype VII.1.1infection in Egyptian poultry flocks.

Indexed as

AnimalsChickensColumbidaeEgyptInfectious bronchitis virusInfluenza A virusNewcastle DiseaseNewcastle disease virusPoultry DiseasesReal-Time Polymerase Chain ReactionVaccinationViral VaccinesViral VaccinesAmino acid residue substitutionAvian Orthoavulavirus 1F proteinIntracerebralSequencing

Identifiers

PMID32698866
PMCPMC7374864
OpenAlexW3044902650

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.