Evidence map›Paper›PMID 32697405›Full record

ArticleProtein science : a publication of the Protein Society2020

Cumulative deamidations of the major lens protein γS-crystallin increase its aggregation during unfolding and oxidation.

Calvin J Vetter, David C Thorn, Samuel G Wheeler, Charlie C Mundorff, Kate A Halverson, Thomas E Wales, Ujwal P Shinde, John R Engen, Larry L David, John A Carver and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
2.1field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 45 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 2 countries.

Calvin J VetterIntegrative Biosciences, Oregon Health & Science University, Portland, Oregon, USA.
David C ThornResearch School of Chemistry, College of Science, The Australian National University, Acton, Australia.
Samuel G WheelerIntegrative Biosciences, Oregon Health & Science University, Portland, Oregon, USA.
Charlie C MundorffChemical Physiology & Biochemistry, Oregon Health & Science University, Portland, Oregon, USA.
Kate A HalversonChemical Physiology & Biochemistry, Oregon Health & Science University, Portland, Oregon, USA.
Thomas E WalesDepartment of Chemistry & Chemical Biology, Northeastern University, Boston, Massachusetts, USA.
Ujwal P ShindeChemical Physiology & Biochemistry, Oregon Health & Science University, Portland, Oregon, USA.
John R EngenDepartment of Chemistry & Chemical Biology, Northeastern University, Boston, Massachusetts, USA.
Larry L DavidChemical Physiology & Biochemistry, Oregon Health & Science University, Portland, Oregon, USA.
John A CarverResearch School of Chemistry, College of Science, The Australian National University, Acton, Australia.
Kirsten J LampiIntegrative Biosciences, Oregon Health & Science University, Portland, Oregon, USA.ORCID 0000-0002-7906-6699
Oregon Health & Science University · USNortheastern University · USAustralian National University · AU

Funding

Proteomics CoreP30EY010572 · NEI · OREGON HEALTH & SCIENCE UNIVERSITY · PI Kate E Keller · 1995 to 2026
$19.4M
Role of crystallin racemization and isomerization in cataractR01EY027768 · NEI · OREGON HEALTH & SCIENCE UNIVERSITY · PI DAVID, LARRY L, LAMPI, KIRSTEN JEANNE · 2017 to 2021
$1.9M
Aggregation of Deamidated Crystallins as a Major Cause of CataractsR01EY027012 · NEI · OREGON HEALTH & SCIENCE UNIVERSITY · PI LAMPI, KIRSTEN JEANNE · 2016 to 2024
$1.9M
LTQ Orbitrap VelosS10OD012246 · OD · OREGON HEALTH & SCIENCE UNIVERSITY · PI DAVID, LARRY L · 2012 to 2012
$854k
NEI NIH HHS EY010572NEI NIH HHS EY027012NEI NIH HHS EY027768NEI NIH HHS P30 EY010572NEI NIH HHS R01 EY027012NEI NIH HHS R01 EY027768NIH HHS OD012246NIH HHS S10 OD012246
6 · The paper itself

Abstract

Age-related lens cataract is the major cause of blindness worldwide. The mechanisms whereby crystallins, the predominant lens proteins, assemble into large aggregates that scatter light within the lens, and cause cataract, are poorly understood. Due to the lack of protein turnover in the lens, crystallins are long-lived. A major crystallin, γS, is heavily modified by deamidation, in particular at surface-exposed N14, N76, and N143 to introduce negative charges. In this present study, deamidated γS was mimicked by mutation with aspartate at these sites and the effect on biophysical properties of γS was assessed via dynamic light scattering, chemical and thermal denaturation, hydrogen-deuterium exchange, and susceptibility to disulfide cross-linking. Compared with wild type γS, a small population of each deamidated mutant aggregated rapidly into large, light-scattering species that contributed significantly to the total scattering. Under partially denaturing conditions in guanidine hydrochloride or elevated temperature, deamidation led to more rapid unfolding and aggregation and increased susceptibility to oxidation. The triple mutant was further destabilized, suggesting that the effects of deamidation were cumulative. Molecular dynamics simulations predicted that deamidation augments the conformational dynamics of γS. We suggest that these perturbations disrupt the native disulfide arrangement of γS and promote the formation of disulfide-linked aggregates. The lens-specific chaperone αA-crystallin was poor at preventing the aggregation of the triple mutant. It is concluded that surface deamidations cause minimal structural disruption individually, but cumulatively they progressively destabilize γS-crystallin leading to unfolding and aggregation, as occurs in aged and cataractous lenses.

Indexed as

Protein AggregatesProtein UnfoldingDeaminationgamma-CrystallinsHumansLens, CrystallineCRYGS protein, humangamma-CrystallinsProtein Aggregatescataractscrystallinsdeamidationdynamic and static light scatteringhydrogen-deuterium exchangemass spectrometryoxidationprotein aggregationprotein unfolding

Identifiers

PMID32697405
PMCPMC7454558
OpenAlexW3043904428

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.