Evidence map›Paper›PMID 32696566›Full record

ArticleMolecular systems biology2020

The Cancer Dependency Map enables drug mechanism-of-action investigations.

Francisca Vazquez, Jesse S Boehm

Open access · goldAbstract readComment
In one paragraph

Article in Molecular systems biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.3field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 30 citations in OpenAlex.

  1. Article
  2. Review
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  5. Review
  6. Article
  7. Article
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  9. Article
  10. lncHUB2: aggregated and inferred knowledge about human and mouse lncRNAs.Database : the journal of biological databases and curation · 2023
    Article
  11. Article
  12. A framework for fibrolamellar carcinoma research and clinical trials.Nature reviews. Gastroenterology & hepatology · 2022
    Review
  13. Article
  14. Article
  15. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Francisca VazquezBroad Institute of Harvard and MIT, Cambridge, MA, USA.ORCID 0000-0002-2857-4685
Jesse S BoehmBroad Institute of Harvard and MIT, Cambridge, MA, USA.ORCID 0000-0002-6795-6336
Broad Institute · US

Funding

The Dana-Farber Cancer Institute Cancer Target Discovery and Development CenterU01CA176058 · NCI · DANA-FARBER CANCER INST · PI HAHN, WILLIAM C. · 2013 to 2021
$7.8M
Rapid ex vivo biosensor cultures to assess dependencies in gastroesophageal cancerR01CA248280 · NCI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI BOEHM, JESSE SAMUEL · 2020 to 2024
$3.2M
NCI NIH HHS HHSN261201500003INCI NIH HHS R01 CA248280NCI NIH HHS U01 CA176058
6 · The paper itself

Abstract

How do small molecules exert their effects in mammalian cells? This seemingly simple question continues to represent one of the fundamental challenges of modern translational science and as such has long been the subject of intense scientific scrutiny. In their recent study, Garnett and colleagues (Gonçalves et al, 2020) demonstrate proof-of-concept for a new way to attack this problem systematically for Oncology drugs, by identifying correlated CRISPR- and drug-killing profiles in the Cancer Dependency Map dataset.

Indexed as

Clustered Regularly Interspaced Short Palindromic RepeatsNeoplasmsAnimals

Identifiers

PMID32696566
PMCPMC7373940
OpenAlexW3044416483

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.