Evidence map›Paper›PMID 32696353›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2020

How to Annotate and Submit a Short Linear Motif to the Eukaryotic Linear Motif Resource.

Marc Gouw, Jesús Alvarado-Valverde, Jelena Čalyševa, Francesca Diella, Manjeet Kumar, Sushama Michael, Kim Van Roey, Holger Dinkel, Toby J Gibson

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Article in Methods in molecular biology (Clifton, N.J.), 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

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4 · The record

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5 · Who and what money

Authors and funding

9 authors.

Marc GouwStructural and Computational Biology Unit, European Molecular Biology Laboratory, Heidelberg, Germany.
Jesús Alvarado-ValverdeStructural and Computational Biology Unit, European Molecular Biology Laboratory, Heidelberg, Germany.
Jelena ČalyševaStructural and Computational Biology Unit, European Molecular Biology Laboratory, Heidelberg, Germany.
Francesca DiellaStructural and Computational Biology Unit, European Molecular Biology Laboratory, Heidelberg, Germany.
Manjeet KumarStructural and Computational Biology Unit, European Molecular Biology Laboratory, Heidelberg, Germany.
Sushama MichaelStructural and Computational Biology Unit, European Molecular Biology Laboratory, Heidelberg, Germany.
Kim Van RoeyStructural and Computational Biology Unit, European Molecular Biology Laboratory, Heidelberg, Germany.
Holger DinkelMax Planck Institute for Biological Cybernetics, Tübingen, Germany.
Toby J GibsonStructural and Computational Biology Unit, European Molecular Biology Laboratory, Heidelberg, Germany. gibson@embl.de.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Over the past few years, it has become apparent that approximately 35% of the human proteome consists of intrinsically disordered regions. Many of these disordered regions are rich in short linear motifs (SLiMs) which mediate protein-protein interactions. Although these motifs are short and often partially conserved, they are involved in many important aspects of protein function, including cleavage, targeting, degradation, docking, phosphorylation, and other posttranslational modifications. The Eukaryotic Linear Motif resource (ELM) was established over 15 years ago as a repository to store and catalogue the scientific discoveries of motifs. Each motif in the database is annotated and curated manually, based on the experimental evidence gathered from publications. The entries themselves are submitted to ELM by filling in two annotation templates designed for motif class and motif instance annotation. In this protocol, we describe the steps involved in annotating new motifs and how to submit them to ELM.

Indexed as

Amino Acid MotifsEukaryotaMolecular Sequence AnnotationProteinsSoftwareProteinsBioinformaticsCell regulationCell signalingDisorderIDPIntrinsically disorderedMotifProtein–protein interactionSLiM

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.