Evidence map›Paper›PMID 32694584›Full record

ArticleScientific reports2020

Capsidiol-related genes are highly expressed in response to Colletotrichum scovillei during Capsicum annuum fruit development stages.

Viviane Y Baba, Adrian F Powell, Suzana T Ivamoto-Suzuki, Luiz F P Pereira, André L L Vanzela, Renata M Giacomin, Susan R Strickler, Lukas A Mueller, Rosana Rodrigues, Leandro S A Gonçalves

Open access · goldAbstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
2.8field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 13 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 6 institutions in 2 countries.

Viviane Y Baba *Laboratório de Ecofisiologia e Biotecnologia Agrícola, Programa de Pós-Graduação em Agronomia, Universidade Estadual de Londrina, Londrina, Brazil.
Adrian F Powell *Boyce Thompson Institute, Ithaca, USA.
Suzana T Ivamoto-Suzuki *Laboratório de Ecofisiologia e Biotecnologia Agrícola, Programa de Pós-Graduação em Agronomia, Universidade Estadual de Londrina, Londrina, Brazil.
Luiz F P PereiraEmpresa Brasileira de Pesquisa Agropecuária, Brasília, Brazil.
André L L VanzelaLaboratório de Citogenética e Diversidade Vegetal, Universidade Estadual de Londrina, Londrina, Brazil.
Renata M GiacominLaboratório de Ecofisiologia e Biotecnologia Agrícola, Programa de Pós-Graduação em Agronomia, Universidade Estadual de Londrina, Londrina, Brazil.
Susan R StricklerBoyce Thompson Institute, Ithaca, USA.
Lukas A MuellerBoyce Thompson Institute, Ithaca, USA.
Rosana RodriguesGenética e Melhoramento de Plantas, Universidade Estadual do Norte Fluminense Darcy Ribeiro, Campos dos Goytacazes, Brazil.
Leandro S A GonçalvesLaboratório de Ecofisiologia e Biotecnologia Agrícola, Programa de Pós-Graduação em Agronomia, Universidade Estadual de Londrina, Londrina, Brazil. leandrosag@uel.br.
Universidade Estadual de Londrina · BRIthaca College · USBrazilian Agricultural Research Corporation · BRCornell University · USState University of Norte Fluminense · BRUniversidade Estadual Paulista (Unesp) · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Capsicum annuum is one of the most important horticultural crops worldwide. Anthracnose disease (Colletotrichum spp.) is a major constraint for chili production, causing substantial losses. Capsidiol is a sesquiterpene phytoalexin present in pepper fruits that can enhance plant resistance. The genetic mechanisms involved in capisidiol biosynthesis are still poorly understood. In this study, a 3' RNA sequencing approach was used to develop the transcriptional profile dataset of C. annuum genes in unripe (UF) and ripe fruits (RF) in response to C. scovillei infection. Results showed 4,845 upregulated and 4,720 downregulated genes in UF, and 2,560 upregulated and 1,762 downregulated genes in RF under fungus inoculation. Four capsidiol-related genes were selected for RT-qPCR analysis, two 5-epi-aristolochene synthase (CA12g05030, CA02g09520) and two 5-epi-aristolochene-1,3-dihydroxylase genes (CA12g05070, CA01g05990). CA12g05030 and CA01g05990 genes showed an early response to fungus infection in RF (24 h post-inoculation-HPI), being 68-fold and 53-fold more expressed at 96 HPI, respectively. In UF, all genes showed a late response, especially CA12g05030, which was 700-fold more expressed at 96 HPI compared to control plants. We are proving here the first high-throughput expression dataset of pepper fruits in response to anthracnose disease in order to contribute for future pepper breeding programs.

Indexed as

ColletotrichumGene Expression Regulation, PlantCapsicumComputational BiologyData MiningFruitGene Expression ProfilingPlant DevelopmentPlant DiseasesSesquiterpenesTranscriptomecapsidiolSesquiterpenes

Identifiers

PMID32694584
PMCPMC7374708
OpenAlexW3044717479

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.