Evidence map›Paper›PMID 32693775›Full record

ArticleBMC genomics2020

Sub-fertility in crossbred bulls: deciphering testicular level transcriptomic alterations between zebu (Bos indicus) and crossbred (Bos taurus x Bos indicus) bulls.

Kamaraj Elango, Arumugam Kumaresan, Ankur Sharma, Pradeep Nag, Mani Arul Prakash, Manish Kumar Sinha, Ayyasamy Manimaran, Ebenezer Samuel King John Peter, Sakthivel Jeyakumar, Sellappan Selvaraju and 2 more

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
3.2field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 26 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 1 country.

Kamaraj ElangoTheriogenology Laboratory, Veterinary Gynaecology and Obstetrics, Southern Regional Station of ICAR- National Dairy Research Institute, Bengaluru, Karnataka, 560030, India.
Arumugam KumaresanTheriogenology Laboratory, Veterinary Gynaecology and Obstetrics, Southern Regional Station of ICAR- National Dairy Research Institute, Bengaluru, Karnataka, 560030, India. ogkumaresan@gmail.com.ORCID http://orcid.org/0000-0002-8061-3477
Ankur SharmaTheriogenology Laboratory, Veterinary Gynaecology and Obstetrics, Southern Regional Station of ICAR- National Dairy Research Institute, Bengaluru, Karnataka, 560030, India.
Pradeep NagTheriogenology Laboratory, Veterinary Gynaecology and Obstetrics, Southern Regional Station of ICAR- National Dairy Research Institute, Bengaluru, Karnataka, 560030, India.
Mani Arul PrakashTheriogenology Laboratory, Veterinary Gynaecology and Obstetrics, Southern Regional Station of ICAR- National Dairy Research Institute, Bengaluru, Karnataka, 560030, India.
Manish Kumar SinhaTheriogenology Laboratory, Veterinary Gynaecology and Obstetrics, Southern Regional Station of ICAR- National Dairy Research Institute, Bengaluru, Karnataka, 560030, India.
Ayyasamy ManimaranSouthern Regional Station of ICAR- National Dairy Research Institute, Bengaluru, Karnataka, 560030, India.
Ebenezer Samuel King John PeterTheriogenology Laboratory, Veterinary Gynaecology and Obstetrics, Southern Regional Station of ICAR- National Dairy Research Institute, Bengaluru, Karnataka, 560030, India.
Sakthivel JeyakumarSouthern Regional Station of ICAR- National Dairy Research Institute, Bengaluru, Karnataka, 560030, India.
Sellappan SelvarajuReproductive physiology Laboratory, ICAR - National Institute of Animal Nutrition and Physiology, Bengaluru, Karnataka, 560030, India.
Kerekoppa P RameshaSouthern Regional Station of ICAR- National Dairy Research Institute, Bengaluru, Karnataka, 560030, India.
Tirtha K DattaAnimal Genomics Laboratory, ICAR - National Dairy Research Institute, Karnal, Haryana, 132 001, India.
National Dairy Research Institute · INNational Institute of Animal Nutrition and Physiology · IN

Funding

Bill and Melinda Gates Foundation OPP1154401
6 · The paper itself

Abstract

backgroundThe incidence of poor semen quality and sub-fertility/infertility is higher in crossbred as compared to Zebu males. Several attempts have been made to understand the possible reasons for higher incidence of fertility problems in crossbred males, at sperm phenotype, proteome and genome level but with variable results. Since the quality of the ejaculated spermatozoa is determined by the testicular environment, assessing the testicular transcriptome between these breeds would help in identifying the possible mechanisms associated with infertility in crossbred bulls. However, such information is not available. We performed global transcriptomic profiling of testicular tissue from crossbred and Zebu bulls using Agilent Bos taurus GXP 8X60k AMADID: 29411 array. To the best of our knowledge, this is the first study comparing the testicular mRNAs between crossbred and Zebu bulls.

resultsOut of the 14,419 transcripts detected in bovine testis, 1466 were differentially expressed between crossbred and Zebu bulls, in which 1038 were upregulated and 428 were downregulated in crossbred bulls. PI4KB and DPY19L2 genes, reported to be involved in sperm capacitation and acrosome formation respectively, were among the top 10 downregulated transcripts in crossbred testis. Genes involved in ubiquitination and proteolysis were upregulated, while genes involved in cell proliferation, stem cell differentiation, stem cell population maintenance, steroidogenesis, WNT signalling, protein localization to plasma membrane, endocannabinoid signalling, heparin binding, cAMP metabolism and GABA receptor activity were downregulated in crossbred testis. Among the 10 genes validated using qPCR, expression of CCNYL, SOX2, MSMB, SPATA7, TNP1, TNP2 and CRISP2 followed the same trend as observed in microarray analysis with SPATA7 being significantly downregulated and transition proteins (TNP1, TNP2) being significantly upregulated in crossbred bulls.

conclusionsAbundant proteolysis by ubiquitination and downregulation of WNT signaling, cell proliferation, differentiation and steroidogenesis might be associated with higher incidence of poor semen quality and/or sub-fertility/infertility in crossbred bulls as compared to Zebu bulls. Downregulation of SPATA7 (Spermatogenesis Associated 7) and upregulation of transition proteins (TNP1 and TNP2) in crossbred bull testis might be associated with impaired spermatogenesis processes including improper chromatin compaction in crossbred bulls.

Indexed as

TestisTranscriptomeAnimalsCattleCell Adhesion MoleculesDNA-Binding ProteinsMaleMembrane ProteinsSemen AnalysisSpermatogenesisSpermatozoaCell Adhesion MoleculesDNA-Binding ProteinsMembrane ProteinsCrossbredSub-fertilityTestisTranscriptomicsZebu

Identifiers

PMID32693775
PMCPMC7372791
OpenAlexW3043873557

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.