ArticleNucleic acids research2020
Adenita: interactive 3D modelling and visualization of DNA nanostructures.
Article in Nucleic acids research, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.
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Who cites it
26 citing papers in PubMed.
- Tetrahedral DNA Nanostructures: A Structural-Family-Aware Review from Computational Design and Biological Stability to Translational Nanomedicine.Nanomaterials (Basel, Switzerland) · 2026Review
- DNA Origami and Their Application in Biosensors.Biosensors · 2026Review
- DNA Origami and Its Applications in Synthetic Biology.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026Review
- How We Simulate DNA Origami.Small methods · 2025Article
- DNAforge: a design tool for nucleic acid wireframe nanostructures.Nucleic acids research · 2024Article
- Structural DNA nanotechnology at the nexus of next-generation bio-applications: challenges and perspectives.Nanoscale advances · 2024Review
- Pursuing excitonic energy transfer with programmable DNA-based optical breadboards.Chemical Society reviews · 2023Review
- Versatile computer-aided design of free-form DNA nanostructures and assemblies.Science advances · 2023Article
- Structure and dynamics of an archetypal DNA nanoarchitecture revealed via cryo-EM and molecular dynamics simulations.Nature communications · 2023Article
- Computational Modeling of DNA 3D Structures: From Dynamics and Mechanics to Folding.Molecules (Basel, Switzerland) · 2023Review
- Nucleic acid nanostructures forApplied physics reviews · 2023Review
- Dynamics of DNA Origami Lattices.Bioconjugate chemistry · 2023Review
- Advanced applications of DNA nanostructures dominated by DNA origami in antitumor drug delivery.Frontiers in molecular biosciences · 2023Review
- Coarse-Grained Simulations for the Characterization and Optimization of Hybrid Protein-DNA Nanostructures.ACS nano · 2022Article
- Nanobase.org: a repository for DNA and RNA nanostructures.Nucleic acids research · 2022Article
- High-Speed Atomic Force Microscopy Visualization of Protein-DNA Interactions Using DNA Origami Frames.Methods in molecular biology (Clifton, N.J.) · 2022Article
- Unified Nanotechnology Format: One Way to Store Them All.Molecules (Basel, Switzerland) · 2021Article
- Rapid prototyping of arbitrary 2D and 3D wireframe DNA origami.Nucleic acids research · 2021Article
- OxDNA.org: a public webserver for coarse-grained simulations of DNA and RNA nanostructures.Nucleic acids research · 2021Article
- The Art of Designing DNA Nanostructures with CAD Software.Molecules (Basel, Switzerland) · 2021Review
Corrections and comments
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Authors and funding
7 authors.
Funding
Abstract
DNA nanotechnology is a rapidly advancing field, which increasingly attracts interest in many different disciplines, such as medicine, biotechnology, physics and biocomputing. The increasing complexity of novel applications requires significant computational support for the design, modelling and analysis of DNA nanostructures. However, current in silico design tools have not been developed in view of these new applications and their requirements. Here, we present Adenita, a novel software tool for the modelling of DNA nanostructures in a user-friendly environment. A data model supporting different DNA nanostructure concepts (multilayer DNA origami, wireframe DNA origami, DNA tiles etc.) has been developed allowing the creation of new and the import of existing DNA nanostructures. In addition, the nanostructures can be modified and analysed on-the-fly using an intuitive toolset. The possibility to combine and re-use existing nanostructures as building blocks for the creation of new superstructures, the integration of alternative molecules (e.g. proteins, aptamers) during the design process, and the export option for oxDNA simulations are outstanding features of Adenita, which spearheads a new generation of DNA nanostructure modelling software. We showcase Adenita by re-using a large nanorod to create a new nanostructure through user interactions that employ different editors to modify the original nanorod.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.