Evidence map›Paper›PMID 32690892›Full record

ArticleNature plants2020

Degradation of SERRATE via ubiquitin-independent 20S proteasome to survey RNA metabolism.

Yanjun Li, Di Sun, Zeyang Ma, Karissa Yamaguchi, Lin Wang, Songxiao Zhong, Xingxing Yan, Baoshuan Shang, Yukihiro Nagashima, Hisashi Koiwa and 5 more

Open access · greenAbstract read
In one paragraph

Article in Nature plants, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
6.0field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 48 citations in OpenAlex.

  1. Article
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  14. Functions and mechanisms of RNA helicases in plants.Journal of experimental botany · 2023
    Review
  15. Intrinsically disordered proteins SAID1/2 condensate on SERRATE for dual inhibition of miRNA biogenesis in Arabidopsis.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  16. Article
  17. microRNA production inFrontiers in plant science · 2023
    Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 5 institutions in 2 countries.

Yanjun Li *Department of Biochemistry and Biophysics, Texas A&M University, College Station, TX, USA.ORCID http://orcid.org/0000-0003-3822-6470
Di Sun *Department of Biochemistry and Biophysics, Texas A&M University, College Station, TX, USA.ORCID http://orcid.org/0000-0002-5857-0343
Zeyang MaDepartment of Biochemistry and Biophysics, Texas A&M University, College Station, TX, USA.
Karissa YamaguchiDepartment of Biochemistry and Biophysics, Texas A&M University, College Station, TX, USA.ORCID http://orcid.org/0000-0002-2312-2380
Lin WangDepartment of Biochemistry and Biophysics, Texas A&M University, College Station, TX, USA.
Songxiao ZhongDepartment of Biochemistry and Biophysics, Texas A&M University, College Station, TX, USA.ORCID http://orcid.org/0000-0001-8426-3905
Xingxing YanDepartment of Biochemistry and Biophysics, Texas A&M University, College Station, TX, USA.
Baoshuan ShangDepartment of Biochemistry and Biophysics, Texas A&M University, College Station, TX, USA.
Yukihiro NagashimaDepartment of Horticultural Sciences, Texas A&M University, College Station, TX, USA.
Hisashi KoiwaDepartment of Horticultural Sciences, Texas A&M University, College Station, TX, USA.
Jiajia HanState Key Laboratory of Plant Genomics, Institute of Genetics and Developmental Biology, The Innovative Academy of Seed Design, Chinese Academy of Sciences, Beijing, China.ORCID http://orcid.org/0000-0002-3904-6642
Qi XieState Key Laboratory of Plant Genomics, Institute of Genetics and Developmental Biology, The Innovative Academy of Seed Design, Chinese Academy of Sciences, Beijing, China.ORCID http://orcid.org/0000-0002-8262-9093
Mingguo ZhouCollege of Plant Protection, Nanjing Agricultural University, Nanjing, China.
Zhiye WangDepartment of Biochemistry and Biophysics, Texas A&M University, College Station, TX, USA. wangzhiye1@zju.edu.cn.ORCID http://orcid.org/0000-0002-2328-3117
Xiuren ZhangDepartment of Biochemistry and Biophysics, Texas A&M University, College Station, TX, USA. xiuren.zhang@tamu.edu.ORCID http://orcid.org/0000-0001-8982-2999
Texas A&M University · USNanjing Agricultural University · CNChinese Academy of Sciences · CNState Key Laboratory of Plant Physiology and BiochemistryYunnan University · CN

Funding

Roles of SWI/SNF complexes in posttranscriptional processing of RNAR01GM132401 · NIGMS · TEXAS A&M AGRILIFE RESEARCH · PI ZHANG, XIUREN · 2019 to 2022
$1.4M
Suppression mechanism of Geminivirus-encoded TrAP proteinR01GM127742 · NIGMS · TEXAS A&M AGRILIFE RESEARCH · PI ZHANG, XIUREN · 2019 to 2022
$1.2M
NIGMS NIH HHS R01 GM127742NIGMS NIH HHS R01 GM132401
6 · The paper itself

Abstract

SERRATE (SE) is a key factor in RNA metabolism. Here, we report that SE binds 20S core proteasome α subunit G1 (PAG1) among other components and is accumulated in their mutants. Purified PAG1-containing 20S proteasome degrades recombinant SE via an ATP- and ubiquitin-independent manner in vitro. Nevertheless, PAG1 is a positive regulator for SE in vivo, as pag1 shows comparable molecular and/or developmental defects relative to se. Furthermore, SE is poorly assembled into macromolecular complexes, exemplified by the microprocessor in pag1 compared with Col-0. SE overexpression triggered the destruction of both transgenic and endogenous protein, leading to similar phenotypes of se and SE overexpression lines. We therefore propose that PAG1 degrades the intrinsically disordered portion of SE to secure the functionality of folded SE that is assembled and protected in macromolecular complexes. This study provides insight into how the 20S proteasome regulates RNA metabolism through controlling its key factor in eukaryotes.

Indexed as

ArabidopsisArabidopsis ProteinsGene Expression Regulation, PlantProteasome Endopeptidase ComplexRNA-Binding ProteinsRNA, PlantUbiquitinArabidopsis ProteinsProteasome Endopeptidase ComplexRNA-Binding ProteinsRNA, PlantSE protein, ArabidopsisUbiquitin

Identifiers

PMID32690892
PMCPMC7426255
OpenAlexW3042584439

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.