Evidence map›Paper›PMID 32690699›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2020

Vps13 is required for the packaging of the ER into autophagosomes during ER-phagy.

Shuliang Chen, Muriel Mari, Smriti Parashar, Dongmei Liu, Yixian Cui, Fulvio Reggiori, Peter J Novick, Susan Ferro-Novick

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed
6.1field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed, 60 citations in OpenAlex.

  1. Atg39-dependent nucleophagy and Atg40-dependent ER-phagy require the Apq12/Brr6/Brl1 complex.Proceedings of the National Academy of Sciences of the United States of America · 2026
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  6. Cell-Free DNA and Mitochondria in Parkinson's Disease.International journal of molecular sciences · 2025
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  13. Different ER-plasma membrane tethers play opposing roles in autophagy of the cortical ER.Proceedings of the National Academy of Sciences of the United States of America · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Shuliang ChenDepartment of Cellular and Molecular Medicine, University of California San Diego, La Jolla, CA 92093-0668.
Muriel MariDepartment of Biomedical Sciences of Cells and Systems, University of Groningen, University Medical Center Groningen, 9713 AV Groningen, The Netherlands.
Smriti ParasharDepartment of Cellular and Molecular Medicine, University of California San Diego, La Jolla, CA 92093-0668.ORCID 0000-0002-6348-2612
Dongmei LiuDepartment of Cellular and Molecular Medicine, University of California San Diego, La Jolla, CA 92093-0668.
Yixian CuiDepartment of Cellular and Molecular Medicine, University of California San Diego, La Jolla, CA 92093-0668.ORCID 0000-0001-8260-1421
Fulvio ReggioriDepartment of Biomedical Sciences of Cells and Systems, University of Groningen, University Medical Center Groningen, 9713 AV Groningen, The Netherlands.ORCID 0000-0003-2652-2686
Peter J NovickDepartment of Cellular and Molecular Medicine, University of California San Diego, La Jolla, CA 92093-0668; pnovick@ucsd.edu sfnovick@ucsd.edu.
Susan Ferro-NovickDepartment of Cellular and Molecular Medicine, University of California San Diego, La Jolla, CA 92093-0668; pnovick@ucsd.edu sfnovick@ucsd.edu.ORCID 0000-0001-8714-7352
University of California San Diego · USUniversity Medical Center Groningen · NL

Funding

GENETICS OF SECRETION IN YEASTR01GM035370 · NIGMS · YALE UNIVERSITY · PI PETER Jay NOVICK · 1985 to 2026
$7.0M
The diverse roles of ER-Golgi trafficking machinery in autophagy and ER quality controlR35GM131681 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Susan FERRO-NOVICK · 2019 to 2026
$5.5M
Coordination of membrane traffic through rab GEF and GAP cascadesR01GM082861 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI NOVICK, PETER JAY · 2008 to 2020
$4.4M
The role of a CK1 kinase in membrane trafficR01GM114111 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI FERRO-NOVICK, SUSAN · 2015 to 2018
$1.5M
The contribution of the secretory pathway to macroautophagyR01GM115422 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI FERRO-NOVICK, SUSAN · 2016 to 2018
$1.1M
NIGMS NIH HHS R01 GM035370NIGMS NIH HHS R01 GM082861NIGMS NIH HHS R01 GM114111NIGMS NIH HHS R01 GM115422NIGMS NIH HHS R35 GM131681
6 · The paper itself

Abstract

Endoplasmic reticulum (ER) macroautophagy (hereafter called ER-phagy) uses autophagy receptors to selectively degrade ER domains in response to starvation or the accumulation of aggregation-prone proteins. Autophagy receptors package the ER into autophagosomes by binding to the ubiquitin-like yeast protein Atg8 (LC3 in mammals), which is needed for autophagosome formation. In budding yeast, cortical and cytoplasmic ER-phagy requires the autophagy receptor Atg40. While different ER autophagy receptors have been identified, little is known about other components of the ER-phagy machinery. In an effort to identify these components, we screened the genome-wide library of viable yeast deletion mutants for defects in the degradation of cortical ER following treatment with rapamycin, a drug that mimics starvation. Among the mutants we identified was

Indexed as

AutophagosomesAutophagyCell LineEndoplasmic ReticulumEndosomesHumansSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSaccharomyces cerevisiae ProteinsVPS13 protein, S cerevisiaeautophagycontact siteER-phagylipid transporterVps13

Identifiers

PMID32690699
PMCPMC7414049
OpenAlexW3044674947

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.