Evidence map›Paper›PMID 32686764›Full record

ArticleScientific reports2020

Structure and co-occurrence patterns of bacterial communities associated with white faeces disease outbreaks in Pacific white-leg shrimp Penaeus vannamei aquaculture.

Yustian Rovi Alfiansah, Sonja Peters, Jens Harder, Christiane Hassenrück, Astrid Gärdes

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
2.9field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 63 citations in OpenAlex.

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  13. Accessing Nystatin through Mariculture.Molecules (Basel, Switzerland) · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Yustian Rovi AlfiansahLeibniz Centre for Tropical Marine Research (ZMT), 28359, Bremen, Germany. yustian.alfiansah@leibniz-zmt.de.
Sonja PetersLeibniz Centre for Tropical Marine Research (ZMT), 28359, Bremen, Germany.
Jens HarderDepartment of Molecular Ecology, Max Planck Institute for Marine Microbiology (MPI-MM), 28359, Bremen, Germany.
Christiane Hassenrück *Leibniz Centre for Tropical Marine Research (ZMT), 28359, Bremen, Germany.
Astrid Gärdes *Leibniz Centre for Tropical Marine Research (ZMT), 28359, Bremen, Germany.
Leibniz Centre for Tropical Marine Research · DEAlfred-Wegener-Institut Helmholtz-Zentrum für Polar- und Meeresforschung · DEMax Planck Institute for Marine Microbiology · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Bacterial diseases cause production failures in shrimp aquacultures. To understand environmental conditions and bacterial community dynamics contributing to white faeces disease (WFD) events, we analysed water quality and compared bacterial communities in water as well as in intestines and faeces of healthy and diseased shrimps, respectively, via 16S rRNA gene sequencing and qPCR of transmembrane regulatory protein (toxR), thermolabile haemolysin (tlh), and thermostable direct haemolysin genes of pathogenic Vibrio parahaemolyticus as a proxy for virulence. WFD occurred when pH decreased to 7.71-7.84, and Alteromonas, Pseudoalteromonas and Vibrio dominated the aquatic bacterial communities. The disease severity further correlated with increased proportions of Alteromonas, Photobacterium, Pseudoalteromonas and Vibrio in shrimp faeces. These opportunistic pathogenic bacteria constituted up to 60% and 80% of the sequences in samples from the early and advances stages of the disease outbreak, respectively, and exhibited a high degree of co-occurrence. Furthermore, toxR and tlh were detected in water at the disease event only. Notably, bacterial community resilience in water occurred when pH was adjusted to 8. Then WFD ceased without a mortality event. In conclusion, pH was a reliable indicator of the WFD outbreak risk. Dissolved oxygen and compositions of water and intestinal bacteria may also serve as indicators for better prevention of WFD events.

Indexed as

AquacultureDisease OutbreaksAnimalsBacteriaFecesGenes, BacterialPenaeidaePhylogenyPondsPrincipal Component AnalysisVirulenceWater Microbiology

Identifiers

PMID32686764
PMCPMC7371890
OpenAlexW3042434115

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.