Evidence map›Paper›PMID 32686326›Full record

ArticleMicrobial biotechnology2020

Soil microbiota influences clubroot disease by modulating Plasmodiophora brassicae and Brassica napus transcriptomes.

Stéphanie Daval, Kévin Gazengel, Arnaud Belcour, Juliette Linglin, Anne-Yvonne Guillerm-Erckelboudt, Alain Sarniguet, Maria J Manzanares-Dauleux, Lionel Lebreton, Christophe Mougel

Open access · goldAbstract read
In one paragraph

Article in Microbial biotechnology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
5.3field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 34 citations in OpenAlex.

  1. Article
  2. Impact ofPathogens (Basel, Switzerland) · 2025
    Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Perspectives for integrated insect pest protection in oilseed rape breeding.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2022
    Review
  9. Article
  10. What Can We Learn from -Omics Approaches to Understand Clubroot Disease?International journal of molecular sciences · 2022
    Review
  11. Article
  12. Molecular Pathotyping ofPathogens (Basel, Switzerland) · 2021
    Review
  13. Candidate Effectors ofFrontiers in microbiology · 2021
    Article
  14. Article
  15. Control ofFrontiers in microbiology · 2021
    Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Stéphanie DavalINRAE, Agrocampus Ouest, Université de Rennes, IGEPP, Le Rheu, F-35650, France.ORCID 0000-0001-8848-4190
Kévin GazengelINRAE, Agrocampus Ouest, Université de Rennes, IGEPP, Le Rheu, F-35650, France.ORCID 0000-0001-9054-2281
Arnaud BelcourINRIA, Université Rennes, CNRS, IRISA, Rennes, F-35000, France.ORCID 0000-0003-1170-0785
Juliette LinglinINRAE, Agrocampus Ouest, Université de Rennes, IGEPP, Ploudaniel, F-29260, France.
Anne-Yvonne Guillerm-ErckelboudtINRAE, Agrocampus Ouest, Université de Rennes, IGEPP, Le Rheu, F-35650, France.
Alain SarniguetINRAE, Agrocampus Ouest, Université d'Angers, IRHS, Beaucouzé, F-49071, France.ORCID 0000-0001-6232-0200
Maria J Manzanares-DauleuxINRAE, Agrocampus Ouest, Université de Rennes, IGEPP, Le Rheu, F-35650, France.ORCID 0000-0002-6452-0393
Lionel LebretonINRAE, Agrocampus Ouest, Université de Rennes, IGEPP, Le Rheu, F-35650, France.ORCID 0000-0003-1759-5269
Christophe MougelINRAE, Agrocampus Ouest, Université de Rennes, IGEPP, Le Rheu, F-35650, France.ORCID 0000-0001-8675-3115
Institut Agro Rennes-Angers · FRCentre National de la Recherche Scientifique · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The contribution of surrounding plant microbiota to disease development has led to the 'pathobiome' concept, which represents the interaction between the pathogen, the host plant and the associated biotic microbial community, resulting or not in plant disease. The aim herein is to understand how the soil microbial environment may influence the functions of a pathogen and its pathogenesis, and the molecular response of the plant to the infection, with a dual-RNAseq transcriptomics approach. We address this question using Brassica napus and Plasmodiophora brassicae, the pathogen responsible for clubroot. A time-course experiment was conducted to study interactions between P. brassicae, two B. napus genotypes and three soils harbouring high, medium or low microbiota diversities and levels of richness. The soil microbial diversity levels had an impact on disease development (symptom levels and pathogen quantity). The P. brassicae and B. napus transcriptional patterns were modulated by these microbial diversities, these modulations being dependent on the host genotype plant and the kinetic time. The functional analysis of gene expressions allowed the identification of pathogen and plant host functions potentially involved in the change of plant disease level, such as pathogenicity-related genes (NUDIX effector) in P. brassicae and plant defence-related genes (glucosinolate metabolism) in B. napus.

Indexed as

Brassica napusMicrobiotaPlasmodiophoridaPlant DiseasesSoilTranscriptomeSoil

Identifiers

PMID32686326
PMCPMC7415369
OpenAlexW3042289140

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.