Evidence map›Paper›PMID 32682392›Full record

ArticleBMC bioinformatics2020

FluConvert and IniFlu: a suite of integrated software to identify novel signatures of emerging influenza viruses with increasing risk.

Chin-Rur Yang, Chwan-Chuen King, Li-Yu Daisy Liu, Chia-Chi Ku

Open access · goldAbstract read
In one paragraph

Article in BMC bioinformatics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.4field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 7 citations in OpenAlex.

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  6. Detection and Prevention of Virus Infection.Advances in experimental medicine and biology · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Chin-Rur YangInstitute of Immunology, College of Medicine, National Taiwan University (NTU), 1 Jen-Ai Road Section 1, Taipei, 10051, Taiwan, Republic of China.
Chwan-Chuen KingInstitute of Epidemiology and Preventive Medicine, College of Public Health, NTU, Taipei, 10055, Taiwan, Republic of China.
Li-Yu Daisy LiuDivision of Biometry, Department of Agronomy, NTU, Taipei, 10617, Taiwan, Republic of China. lyliu@ntu.edu.tw.
Chia-Chi KuInstitute of Immunology, College of Medicine, National Taiwan University (NTU), 1 Jen-Ai Road Section 1, Taipei, 10051, Taiwan, Republic of China. chiachiku@ntu.edu.tw.ORCID http://orcid.org/0000-0002-5740-1505
National Taiwan University · TW

Funding

Academia Sinica AS-SS-106-04-4Ministry of Science and Technology, Taiwan MOST 107-2320-B-002-008Ministry of Science and Technology, Taiwan MOST 108-2320-B-002-038
6 · The paper itself

Abstract

backgroundThe pandemic threat of influenza has attracted great attention worldwide. To assist public health decision-makers, new suites of tools are needed to rapidly process and combine viral information retrieved from public-domain databases for a better risk assessment.

resultsUsing our recently developed FluConvert and IniFlu software, we automatically processed and rearranged sequence data by standard viral nomenclature, determined the group-related consensus sequences, and identified group-specific polygenic signatures. The software possesses powerful ability to integrate viral, clinical, and epidemiological data. We demonstrated that both multiple basic amino acids at the cleavage site of the HA gene and also at least 11 more evidence-based viral amino acid substitutions present in global highly pathogenic avian influenza H5N2 viruses during the years 2009-2016 that are associated with viral virulence and human infection.

conclusionsFluConvert and IniFlu are useful to monitor and assess all subtypes of influenza viruses with pandemic potential. These programs are implemented through command-line and user-friendly graphical interfaces, and identify molecular signatures with virological, epidemiological and clinical significance. FluConvert and IniFlu are available at https://apps.flutures.com or https://github.com/chinrur/FluConvert_IniFlu.

Indexed as

User-Computer InterfaceAmino Acid SequenceAnimalsBirdsHemagglutinin Glycoproteins, Influenza VirusInfluenza A Virus, H5N2 SubtypeInfluenza in BirdsRisk AssessmentSequence AlignmentVirulenceHemagglutinin Glycoproteins, Influenza VirusH5N2Highly pathogenic avian influenza virusesPandemic potentialRisk assessmentViral and immunological informatics

Identifiers

PMID32682392
PMCPMC7368604
OpenAlexW3043784686

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.