Evidence map›Paper›PMID 32681185›Full record

ArticleFunctional & integrative genomics2020

Proteomic profiling of developing wheat heads under water-stress.

Shahidul Islam, Penghao Wang, Delphine Vincent, Javed M Khan, Angela Juhasz, Dean Diepeveen, Richard J Lipscombe, Wujun Ma, Rudi Appels

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In one paragraph

Article in Functional & integrative genomics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.7field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
  2. Article
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  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 6 institutions in 1 country.

Shahidul IslamAustralia China Centre for Wheat Improvement, College of Science Health Engineering and Education, Murdoch University, 90 South Street, Murdoch, WA, 6150, Australia.
Penghao WangCollege of Science, Health, Engineering and Education, Murdoch University, 90 South Street, Murdoch, WA, 6150, Australia.
Delphine VincentAgriculture Victoria, AgriBio, Centre for AgriBioscience, 5 Ring Road, Bundoora, VIC, 3083, Australia.
Javed M KhanProteomics International, QEII Medical Centre, 6 Verdun Street, Nedlands, Perth, WA, 6009, Australia.
Angela JuhaszSchool of Science, Edith Cowan University, 270 Joondalup Drive, Joondalup, WA, 6027, Australia.
Dean DiepeveenDepartment of Primary Industries and Regional Development, Western Australia, 3 Baron-Hay Court, South Perth, WA, 6151, Australia.
Richard J LipscombeProteomics International, QEII Medical Centre, 6 Verdun Street, Nedlands, Perth, WA, 6009, Australia.
Wujun MaAustralia China Centre for Wheat Improvement, College of Science Health Engineering and Education, Murdoch University, 90 South Street, Murdoch, WA, 6150, Australia.
Rudi AppelsSchool of BioSciences, University of Melbourne, Parkville, VIC, 3010, Australia. rudi.appels@unimelb.edu.au.ORCID http://orcid.org/0000-0002-5369-5227
Murdoch University · AUQueen Elizabeth II Medical Centre · AUAgriculture Victoria · AUDepartment of Primary Industries and Regional Development · AUEdith Cowan University · AUThe University of Melbourne · AU

Funding

Australia China Centre for Wheat Improvement -
6 · The paper itself

Abstract

A replicated iTRAQ (isobaric tags for relative and absolute quantification) study on developing wheat heads from two doubled haploid (DH) lines identified from a cross between cv Westonia x cv Kauz characterized the proteome changes influenced by reproductive stage water-stress. All lines were exposed to 10 days of water-stress from early booting (Zadok 40), with sample sets taken from five head developmental stages. Two sample groups (water-stressed and control) account for 120 samples that required 18 eight-plex iTRAQ runs. Based on the IWGSC RefSeq v1 wheat assembly, among the 4592 identified proteins, a total of 132 proteins showed a significant response to water-stress, including the down-regulation of a mitochondrial Rho GTPase, a regulator of intercellular fundamental biological processes (7.5 fold) and cell division protein FtsZ at anthesis (6.0 fold). Up-regulated proteins included inosine-5'-monophosphate dehydrogenase (3.83 fold) and glycerophosphodiester phosphodiesterase (4.05 fold). The Pre-FHE and FHE stages (full head emerged) of head development were differentiated by 391 proteins and 270 proteins differentiated the FHE and Post-FHE stages. Water-stress during meiosis affected seed setting with 27% and 6% reduction in the progeny DH105 and DH299 respectively. Among the 77 proteins that differentiated between the two DH lines, 7 proteins were significantly influenced by water-stress and correlated with the seed set phenotype response of the DH lines to water-stress (e.g. the up-regulation of a subtilisin-like protease in DH 299 relative to DH 105). This study provided unique insights into the biological changes in developing wheat head that occur during water-stress.

Indexed as

DehydrationGenotypePhenotypePlant ProteinsProteomicsTriticumPlant ProteinsiTRAQProtein expressionWater-stressWheat head

Identifiers

PMID32681185
OpenAlexW3043705556

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.