Evidence map›Paper›PMID 32681183›Full record

ArticleEuropean biophysics journal : EBJ2020

Characterization of the apo-form of extracellular hemoglobin of Glossoscolex paulistus (HbGp) and its stability in the presence of urea.

Ana E B Barros, Célia Sulzbacher Caruso, Fernanda Rosa Alves, Marcel Tabak, Francisco A O Carvalho

Open access · greenAbstract read
PubMed Publisher
In one paragraph

Article in European biophysics journal : EBJ, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.1field-weighted citation impact, top 57% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 1 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Ana E B BarrosInstituto de Química de São Carlos, Universidade de São Paulo, São Carlos, SP, Brazil.
Célia Sulzbacher CarusoInstituto de Química de São Carlos, Universidade de São Paulo, São Carlos, SP, Brazil.
Fernanda Rosa AlvesInstituto de Química de São Carlos, Universidade de São Paulo, São Carlos, SP, Brazil.
Marcel TabakInstituto de Química de São Carlos, Universidade de São Paulo, São Carlos, SP, Brazil.
Francisco A O CarvalhoUniversidade Federal do Sul e Sudeste do Pará, Marabá, PA, Brazil. adriano.carvalho@unifesspa.edu.br.ORCID http://orcid.org/0000-0002-6025-4120
Universidade de São Paulo · BRUniversidade Federal do Sul e Sudeste do Pará · BR

Funding

Conselho Nacional de Desenvolvimento Científico e Tecnológico 407891/2018-8Coordenação de Aperfeiçoamento de Pessoal de Nível Superior 1480634
6 · The paper itself

Abstract

The structural study of small heme-containing proteins, such as myoglobin, in the apo-form lacking heme has been extensively described, but the characterization and stability of the giant Glossoscolex paulistus hemoglobin (HbGp), in the absence of heme groups, has not been studied. Spectroscopic data show efficient extraction of the heme groups from the hemoglobin, with relatively small secondary and tertiary structural changes in apo-HbGp noticed compared to oxy-HbGp. Electrophoresis shows a partial precipitation of the trimer abc (significantly lower intensity of the corresponding band in the gel), due to extraction of heme groups, and the predominance of the intense monomeric d band, as well as of two linker bands. AUC and DLS data agree with SDS-PAGE in showing that the apo-HbGp undergoes dissociation into the d and abc subunits. Subunits d and abc are characterized by sedimentation coefficients and percentage contributions of 2.0 and 3.0 S and 76 and 24%, respectively. DLS data suggest that the apo-HbGp is unstable, and two populations are present in solution: one with a diameter around 6.0 nm, identified with the dissociated species, and a second one with diameter 100-180 nm, due to aggregated protein. Finally, the presence of urea promotes the exposure of the fluorescent probes, extrinsic ANS and intrinsic protein tryptophans to the aqueous solvent due to the unfolding process. An understanding of the effect of heme extraction on the stability of hemoproteins is important for biotechnological approaches such as the introduction of non-native prosthetic groups and development of artificial enzymes with designed properties.

Indexed as

OligochaetaAnimalsApoproteinsExtracellular SpaceHemoglobinsProtein StabilityUreaApoproteinsHemoglobinsUreaApo-HbGpCharacterizationFluorescent probesHeme extractionUrea

Identifiers

PMID32681183
OpenAlexW3043739488

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.