ArticleBioinformatics (Oxford, England)2020
PAFway: pairwise associations between functional annotations in biological networks and pathways.
Article in Bioinformatics (Oxford, England), 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
1 citing paper in PubMed.
- AraLeTA: An Arabidopsis leaf expression atlas across diurnal and developmental scales.Plant physiology · 2024Article
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Authors and funding
2 authors.
Funding
Abstract
motivationLarge gene networks can be dense and difficult to interpret in a biologically meaningful way.
resultsHere, we introduce PAFway, which estimates pairwise associations between functional annotations in biological networks and pathways. It answers the biological question: do genes that have a specific function tend to regulate genes that have a different specific function? The results can be visualized as a heatmap or a network of biological functions. We apply this package to reveal associations between functional annotations in an Arabidopsis thaliana gene network. AVAILABILITY AND IMPLEMENTATION: PAFway is submitted to CRAN. Currently available here: https://github.com/ezer/PAFway. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.