Evidence map›Paper›PMID 32678197›Full record

ArticleScientific reports2020

Inhibition of indole production increases the activity of quinolone antibiotics against E. coli persisters.

Ashraf Zarkan, Marta Matuszewska, Stephen B Trigg, Meng Zhang, Daaniyah Belgami, Cameron Croft, Junyan Liu, Sawssen El-Ouisi, Jack Greenhalgh, James S Duboff and 2 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.2field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 25 citations in OpenAlex.

  1. Review
  2. Review
  3. Indole signaling inGut microbes · 2025
    Review
  4. Article
  5. Article
  6. Indole-3-acetic acid (IAA) protectsApplied and environmental microbiology · 2025
    Article
  7. Article
  8. Antibiotic perturbations to the gut microbiome.Nature reviews. Microbiology · 2023
    Review
  9. Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 1 country.

Ashraf Zarkan *Department of Genetics, University of Cambridge, Cambridge, CB2 3EH, UK. maa77@cam.ac.uk.
Marta Matuszewska *Department of Genetics, University of Cambridge, Cambridge, CB2 3EH, UK.
Stephen B TriggDepartment of Genetics, University of Cambridge, Cambridge, CB2 3EH, UK.
Meng ZhangDepartment of Genetics, University of Cambridge, Cambridge, CB2 3EH, UK.
Daaniyah BelgamiDepartment of Genetics, University of Cambridge, Cambridge, CB2 3EH, UK.
Cameron CroftDepartment of Genetics, University of Cambridge, Cambridge, CB2 3EH, UK.
Junyan LiuDepartment of Genetics, University of Cambridge, Cambridge, CB2 3EH, UK.
Sawssen El-OuisiDepartment of Genetics, University of Cambridge, Cambridge, CB2 3EH, UK.
Jack GreenhalghDepartment of Pharmacology, University of Cambridge, Cambridge, CB2 1PD, UK.
James S DuboffDepartment of Genetics, University of Cambridge, Cambridge, CB2 3EH, UK.
Taufiq RahmanDepartment of Pharmacology, University of Cambridge, Cambridge, CB2 1PD, UK.
David K SummersDepartment of Genetics, University of Cambridge, Cambridge, CB2 3EH, UK.
University of Cambridge · GBWellcome Sanger Institute · GB

Funding

Biotechnology and Biological Sciences Research Council Research StudentshipMedical Research Council MC_PC_19032Medical Research Council Research StudentshipWellcome Trust 209749/Z/17/ZWellcome Trust RG93172
6 · The paper itself

Abstract

Persisters are a sub-population of genetically sensitive bacteria that survive antibiotic treatment by entering a dormant state. The emergence of persisters from dormancy after antibiotic withdrawal leads to recurrent infection. Indole is an aromatic molecule with diverse signalling roles, including a role in persister formation. Here we demonstrate that indole stimulates the formation of Escherichia coli persisters against quinolone antibiotics which target the GyrA subunit of DNA gyrase. However, indole has no effect on the formation of E. coli persisters against an aminocoumarin, novobiocin, which targets the GyrB subunit of DNA gyrase. Two modes of indole signalling have been described: persistent and pulse. The latter refers to the brief but intense elevation of intracellular indole during stationary phase entry. We show that the stimulation of quinolone persisters is due to indole pulse, rather than persistent, signalling. In silico docking of indole on DNA gyrase predicts that indole docks perfectly to the ATP binding site of the GyrB subunit. We propose that the inhibition of indole production offers a potential route to enhance the activity of quinolones against E. coli persisters.

Indexed as

Anti-Bacterial AgentsDNA GyraseDose-Response Relationship, DrugDrug Resistance, BacterialEscherichia coliIndolesProtein BindingQuinolonesSignal TransductionStructure-Activity RelationshipAnti-Bacterial AgentsDNA GyraseIndolesQuinolones

Identifiers

PMID32678197
PMCPMC7366635
OpenAlexW3042898415

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.