Evidence map›Paper›PMID 32677750›Full record

ArticleMolecular genetics & genomic medicine2020

An update of pathogenic variants in ASPM, WDR62, CDK5RAP2, STIL, CENPJ, and CEP135 underlying autosomal recessive primary microcephaly in 32 consanguineous families from Pakistan.

Sajida Rasool, Jamshaid Mahmood Baig, Abubakar Moawia, Ilyas Ahmad, Maria Iqbal, Syeda Seema Waseem, Maria Asif, Uzma Abdullah, Ehtisham Ul Haq Makhdoom, Emrah Kaygusuz and 17 more

Open access · goldAbstract read
In one paragraph

Article in Molecular genetics & genomic medicine, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
3.1field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 33 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

27 authors at 10 institutions in 3 countries.

Sajida RasoolCologne Center for Genomics (CCG), University of Cologne, Cologne, Germany.
Jamshaid Mahmood BaigDepartment of Bioinformatics & Biotechnology, Faculty of Basic and Applied Sciences, International Islamic University, Islamabad, Pakistan.
Abubakar MoawiaCologne Center for Genomics (CCG), University of Cologne, Cologne, Germany.
Ilyas AhmadInstitute for Cardiogenetics, University of Luebeck, Luebeck, Germany.
Maria IqbalCologne Center for Genomics (CCG), University of Cologne, Cologne, Germany.
Syeda Seema WaseemCologne Center for Genomics (CCG), University of Cologne, Cologne, Germany.
Maria AsifCologne Center for Genomics (CCG), University of Cologne, Cologne, Germany.
Uzma AbdullahUniversity Institute of Biochemistry and Biotechnology (UIBB), PMAS-ARID Agriculture University, Rawalpindi, Pakistan.
Ehtisham Ul Haq MakhdoomCologne Center for Genomics (CCG), University of Cologne, Cologne, Germany.
Emrah KaygusuzCologne Center for Genomics (CCG), University of Cologne, Cologne, Germany.
Muhammad ZakariaHuman Molecular Genetics Laboratory, Health Biotechnology Division, National Institute for Biotechnology and Genetic Engineering (NIBGE) College, PIEAS, Faisalabad, Pakistan.
Shafaq RamzanHuman Molecular Genetics Laboratory, Health Biotechnology Division, National Institute for Biotechnology and Genetic Engineering (NIBGE) College, PIEAS, Faisalabad, Pakistan.
Saif Ul HaqueNuclear Medicine, Oncology and Radiotherapy Institute (NORI), Islamabad, Pakistan.
Asif MirDepartment of Bioinformatics & Biotechnology, Faculty of Basic and Applied Sciences, International Islamic University, Islamabad, Pakistan.
Iram AnjumDepartment of Biotechnology, Kinnaird College University Lahore, Lahore, Pakistan.
Mehak FiazInstitute of Biochemistry and Biotechnology, Quaid-e-Azam Campus, University of the Punjab, Lahore, Pakistan.
Zafar AliHuman Molecular Genetics Laboratory, Health Biotechnology Division, National Institute for Biotechnology and Genetic Engineering (NIBGE) College, PIEAS, Faisalabad, Pakistan.
Muhammad TariqHuman Molecular Genetics Laboratory, Health Biotechnology Division, National Institute for Biotechnology and Genetic Engineering (NIBGE) College, PIEAS, Faisalabad, Pakistan.ORCID 0000-0002-5334-403X
Neelam SabaInstitute of Biochemistry and Biotechnology, Quaid-e-Azam Campus, University of the Punjab, Lahore, Pakistan.
Wajid HussainDepartment of Zoology, University of Okara, Okara, Pakistan.
Birgit BuddeCologne Center for Genomics (CCG), University of Cologne, Cologne, Germany.
Saba IrshadInstitute of Biochemistry and Biotechnology, Quaid-e-Azam Campus, University of the Punjab, Lahore, Pakistan.
Angelika Anna NoegelInstitute of Biochemistry I, Medical Faculty, University of Cologne, Cologne, Germany.
Stefan HöningInstitute of Biochemistry I, Medical Faculty, University of Cologne, Cologne, Germany.
Shahid Mahmood BaigHuman Molecular Genetics Laboratory, Health Biotechnology Division, National Institute for Biotechnology and Genetic Engineering (NIBGE) College, PIEAS, Faisalabad, Pakistan.
Peter NürnbergCologne Center for Genomics (CCG), University of Cologne, Cologne, Germany.
Muhammad Sajid HussainCologne Center for Genomics (CCG), University of Cologne, Cologne, Germany.ORCID 0000-0002-1353-8809
National Institute for Biotechnology and Genetic Engineering · PKUniversity of Cologne · DEUniversity of the Punjab · PKInternational Islamic University, Islamabad · PKBilecik Şeyh Edebali Üniversitesi · TRInstitute for Integrative and Experimental Genomics · DEKarachi Institute of Radiotherapy and Nuclear Medicine · PKKinnaird College for Women University · PKPir Mehr Ali Shah Arid Agriculture University · PKUniversity of Okara · PK

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundPrimary microcephaly (MCPH) is a congenital neurodevelopmental disorder manifesting as small brain and intellectual disability. It underlies isolated reduction of the cerebral cortex that is reminiscent of early hominids which makes it suitable model disease to study the hominin-specific volumetric expansion of brain. Mutations in 25 genes have been reported to cause this disorder. Although majority of these genes were discovered in the Pakistani population, still a significant proportion of these families remains uninvestigated.

methodsWe studied a cohort of 32 MCPH families from different regions of Pakistan. For disease gene identification, genome-wide linkage analysis, Sanger sequencing, gene panel, and whole-exome sequencing were performed.

resultsBy employing these techniques individually or in combination, we were able to discern relevant disease-causing DNA variants. Collectively, 15 novel mutations were observed in five different MCPH genes; ASPM (10), WDR62 (1), CDK5RAP2 (1), STIL (2), and CEP135 (1). In addition, 16 known mutations were also verified. We reviewed the literature and documented the published mutations in six MCPH genes. Intriguingly, our cohort also revealed a recurrent mutation, c.7782_7783delGA;p.(Lys2595Serfs*6), of ASPM reported worldwide. Drawing from this collective data, we propose two founder mutations, ASPM:c.9557C>G;p.(Ser3186*) and CENPJ:c.18delC;p.(Ser7Profs*2), in the Pakistani population.

conclusionsWe discovered novel DNA variants, impairing the function of genes indispensable to build a proper functioning brain. Our study expands the mutational spectra of known MCPH genes and also provides supporting evidence to the pathogenicity of previously reported mutations. These novel DNA variants will be helpful for the clinicians and geneticists for establishing reliable diagnostic strategies for MCPH families.

Indexed as

Genetic LociMutationCarrier ProteinsCell Cycle ProteinsConsanguinityFemaleFounder EffectGene FrequencyHumansIntracellular Signaling Peptides and ProteinsMaleMicrocephalyMicrotubule-Associated ProteinsNerve Tissue ProteinsPedigreeASPM protein, humanCarrier ProteinsCDK5RAP2 protein, humanCell Cycle ProteinsCENPJ protein, humanCEP135 protein, humanIntracellular Signaling Peptides and ProteinsMicrotubule-Associated ProteinsNerve Tissue ProteinsSTIL protein, humanWDR62 protein, humanASPMCDK5RAP2CENPJCEP135MCPHSTIL

Identifiers

PMID32677750
PMCPMC7507472
OpenAlexW3042682951

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.