Evidence map›Paper›PMID 32675224›Full record

SynthesisHaematologica2021

Genetic variation near CXCL12 is associated with susceptibility to HIV-related non-Hodgkin lymphoma.

Christian W Thorball, Tiphaine Oudot-Mellakh, Nava Ehsan, Christian Hammer, Federico A Santoni, Jonathan Niay, Dominique Costagliola, Cécile Goujard, Laurence Meyer, Sophia S Wang and 14 more

Open access · goldAbstract readMeta-Analysis
In one paragraph

Synthesis in Haematologica, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.3field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. B-Cell NHL Subtype Risk Associated with Autoimmune Conditions and PRS.Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

24 authors at 18 institutions in 4 countries.

Christian W ThorballEcole Polytechnique Federale de Lausanne, Swiss Institute of Bioinformatics, Lausanne, Switzerland.
Tiphaine Oudot-MellakhCentre de genetique moleculaire et chromosomique, GH La Pitié Salpetriere, Paris, France.
Nava EhsanScripps Research Translational Institute, La Jolla, CA, USA.
Christian HammerDept. of Cancer Immunology and Human Genetics, Genentech, South San Francisco, CA, USA.
Federico A SantoniDept. of Endocrinology, Diabetology and Metabolism, Lausanne University Hospital, Switzerland.
Jonathan NiayCentre de genetique moleculaire et chromosomique, GH La Pitié Salpetriere, Paris, France.
Dominique CostagliolaSorbonne Université, Institut Pierre Louis d'epidemiologie, Paris, France.
Cécile GoujardParis-Sud University and Bicêtre Hospital, Le Kremlin-Bicêtre, France.
Laurence MeyerParis-Sud University, Le Kremlin-Bicêtre, France.
Sophia S WangDivision of Health Analytics, City of Hope Beckman Research Institute, Duarte, CA, USA.
Shehnaz K HussainDepartment of Medicine, Cedars-Sinai Medical Center, Los Angeles, CA, USA.
Ioannis TheodorouCentre de genetique moleculaire et chromosomique, GH La Pitié Salpetriere, Paris, France.
Matthias CavassiniService of Infectious Diseases, Lausanne University Hospital and University of Lausanne, Switzerland.
Andri RauchDept. of Infectious Diseases, Bern University Hospital, University of Bern, Switzerland.
Manuel BattegayDept. of Infectious Diseases and Hospital Epidemiology, University Hospital Basel, Switzerland.
Matthias HoffmannDivision of Infectious Diseases and Hospital Epidemiology, Kantonsspital Olten, Switzerland.
Patrick SchmidDivision of Infectious Diseases, Cantonal Hospital of St. Gallen, St. Gallen, Switzerland.
Enos BernasconiDivision of Infectious Diseases, Regional Hospital of Lugano, Lugano, Switzerland.
Huldrych F GünthardInstitute of Medical Virology, University of Zurich, Switzerland.
Pejman MohammadiScripps Research Translational Institute, La Jolla, CA, USA.
Paul J McLarenJC Wilt Infectious Diseases Research Centre, Public Health Agency of Canada, Winnipeg, Canada.
Charles S RabkinDivision of Cancer Epidemiology and Genetics, National Cancer Institute, Rockville, MD, USA.
Caroline BessonDepartment of Hematology and Oncology, Hospital of Versailles, Le Chesnay, France.
Jacques FellayEcole Polytechnique Federale de Lausanne and University of Lausanne, Switzerland.
Sorbonne Université · FRScripps Research Institute · USSIB Swiss Institute of Bioinformatics · CHUniversity Hospital of Lausanne · CHAssistance Publique – Hôpitaux de Paris · FRCedars-Sinai Medical Center · USCentre Hospitalier de Versailles · FRCity of Hope · USInstitut Pierre Louis d‘Épidémiologie et de Santé Publique · FRKantonsschule Olten · CHNational Cancer Institute · USOspedale regionale di Lugano · CHPublic Health Agency of Canada · CAUniversité Paris-Sud · FRUniversity Hospital of Basel · CHUniversity of Bern · CHUniversity of St.Gallen · CHUniversity of Zurich · CH

Funding

Molecular mechanisms of infection-related cancerZIACP010212 · NCI · DIVISION OF CANCER EPIDEMIOLOGY AND GENETICS · PI ENGELS, ERIC A · 2010 to 2025
$4.6M
6 · The paper itself

Abstract

Human immunodeficiency virus (HIV) infection is associated with an increased risk of non-Hodgkin lymphoma (NHL). Even in the era of suppressive antiretroviral treatment, HIV-infected individuals remain at higher risk of developing NHL compared to the general population. To identify potential genetic risk loci, we performed case-control genome-wide association studies and a meta-analysis across three cohorts of HIV+ patients of European ancestry, including a total of 278 cases and 1924 matched controls. We observed a significant association with NHL susceptibility in the C-X-C motif chemokine ligand 12 (CXCL12) region on chromosome 10. A fine mapping analysis identified rs7919208 as the most likely causal variant (P = 4.77e-11), with the G>A polymorphism creating a new transcription factor binding site for BATF and JUND. These results suggest a modulatory role of CXCL12 regulation in the increased susceptibility to NHL observed in the HIV-infected population.

Indexed as

HIV InfectionsLymphoma, AIDS-RelatedLymphoma, Non-HodgkinAnti-Retroviral AgentsCase-Control StudiesChemokine CXCL12Genome-Wide Association StudyHumansPolymorphism, GeneticAnti-Retroviral AgentsChemokine CXCL12CXCL12 protein, human

Identifiers

PMID32675224
PMCPMC8327743
OpenAlexW3043245960

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.