Evidence map›Paper›PMID 32673399›Full record

ArticleThe Journal of cell biology2020

Pluripotent stem cells with low differentiation potential contain incompletely reprogrammed DNA replication.

Theodore Paniza, Madhura Deshpande, Ning Wang, Ryan O'Neil, Michael V Zuccaro, Morgan Elizabeth Smith, Advaitha Madireddy, Daylon James, Joseph Ecker, Zev Rosenwaks and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of cell biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.1field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 22 citations in OpenAlex.

  1. Review
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  8. Review
  9. Replication stress causes delayed mitotic entry and chromosome 12 fragility at the ANKS1B large neuronal gene in human induced pluripotent stem cells.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2023
    Article
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 1 country.

Theodore PanizaThe Ronald O. Perelman and Claudia Cohen Center for Reproductive Medicine, Weill Cornell Medicine, New York, NY.
Madhura DeshpandeThe Ronald O. Perelman and Claudia Cohen Center for Reproductive Medicine, Weill Cornell Medicine, New York, NY.
Ning WangDepartment of Pediatrics, Columbia University, New York, NY.
Ryan O'NeilPlant Molecular and Cellular Biology Laboratory, Salk Institute, La Jolla, CA.
Michael V ZuccaroDepartment of Pediatrics, Columbia University, New York, NY.
Morgan Elizabeth SmithDepartment of Pediatrics, Columbia University, New York, NY.
Advaitha MadireddyDepartment of Pediatric Hematology/Oncology, Rutgers University, New Brunswick, NJ.
Daylon JamesThe Ronald O. Perelman and Claudia Cohen Center for Reproductive Medicine, Weill Cornell Medicine, New York, NY.
Joseph EckerPlant Molecular and Cellular Biology Laboratory, Salk Institute, La Jolla, CA.
Zev RosenwaksThe Ronald O. Perelman and Claudia Cohen Center for Reproductive Medicine, Weill Cornell Medicine, New York, NY.
Dieter EgliDepartment of Pediatrics, Columbia University, New York, NY.
Jeannine GerhardtThe Ronald O. Perelman and Claudia Cohen Center for Reproductive Medicine, Weill Cornell Medicine, New York, NY.
Cornell University · USColumbia University · USSalk Institute for Biological Studies · USRutgers, The State University of New Jersey · US

Funding

The multifaceted role of the Fanconi anemia tumor suppressor pathway in facilitating DNA replicationR00HL136870 · NHLBI · RBHS -CANCER INSTITUTE OF NEW JERSEY · PI MADIREDDY, ADVAITHA · 2018 to 2020
$900k
Identification of compounds stabilizing the GAA repeats in Friedreich’s ataxia cellsR03NS106216 · NINDS · WEILL MEDICAL COLL OF CORNELL UNIV · PI GERHARDT, JEANNINE · 2018 to 2019
$170k
NHLBI NIH HHS R00 HL136870NINDS NIH HHS R03 NS106216
6 · The paper itself

Abstract

Reprogrammed pluripotent stem cells (PSCs) are valuable for research and potentially for cell replacement therapy. However, only a fraction of reprogrammed PSCs are developmentally competent. Genomic stability and accurate DNA synthesis are fundamental for cell development and critical for safety. We analyzed whether defects in DNA replication contribute to genomic instability and the diverse differentiation potentials of reprogrammed PSCs. Using a unique single-molecule approach, we visualized DNA replication in isogenic PSCs generated by different reprogramming approaches, either somatic cell nuclear transfer (NT-hESCs) or with defined factors (iPSCs). In PSCs with lower differentiation potential, DNA replication was incompletely reprogrammed, and genomic instability increased during replicative stress. Reprogramming of DNA replication did not correlate with DNA methylation. Instead, fewer replication origins and a higher frequency of DNA breaks in PSCs with incompletely reprogrammed DNA replication were found. Given the impact of error-free DNA synthesis on the genomic integrity and differentiation proficiency of PSCs, analyzing DNA replication may be a useful quality control tool.

Indexed as

AnimalsCell DifferentiationCells, CulturedCellular ReprogrammingDNADNA MethylationDNA ReplicationGenomic InstabilityHuman Embryonic Stem CellsHumansInduced Pluripotent Stem CellsDNA

Identifiers

PMID32673399
PMCPMC7480103
OpenAlexW3042556224

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.