Evidence map›Paper›PMID 32670464›Full record

ArticleProceedings. IEEE International Symposium on Biomedical Imaging2019

LIVER STEATOSIS SEGMENTATION WITH DEEP LEARNING METHODS.

Xiaoyuan Guo, Fusheng Wang, George Teodoro, Alton B Farris, Jun Kong

Abstract read
In one paragraph

Article in Proceedings. IEEE International Symposium on Biomedical Imaging, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Xiaoyuan GuoDepartment of Computer Science, Emory University, Atlanta, GA, 30322, USA.
Fusheng WangDepartment of Computer Science, Stony Brook University, Stony Brook, NY, 11794, USA.
George TeodoroDepartment of Computer Science, University of Brasília, Brasília, DF, Brazil.
Alton B FarrisDepartment of Computer Science, Emory University, Atlanta, GA, 30322, USA.
Jun KongDepartment of Mathematics and Statistics, Georgia State University, Atlanta, GA, 30303, USA.

Funding

Quantitative Analysis of GBM Invasion Mechanisms with New Imaging ProtocolK25CA181503 · NCI · GEORGIA STATE UNIVERSITY · PI KONG, JUN · 2014 to 2018
$592k
NCI NIH HHS K25 CA181503
6 · The paper itself

Abstract

Liver steatosis is known as the abnormal accumulation of lipids within cells. An accurate quantification of steatosis area within the liver histopathological microscopy images plays an important role in liver disease diagnosis and transplantation assessment. Such a quantification analysis often requires a precise steatosis segmentation that is challenging due to abundant presence of highly overlapped steatosis droplets. In this paper, a deep learning model Mask-RCNN is used to segment the steatosis droplets in clumps. Extended from Faster R-CNN, Mask-RCNN can predict object masks in addition to bounding box detection. With transfer learning, the resulting model is able to segment overlapped steatosis regions at 75.87% by Average Precision, 60.66% by Recall,65.88% by F1-score, and 76.97% by Jaccard index, promising to support liver disease diagnosis and allograft rejection prediction in future clinical practice.

Indexed as

deep learningLiver steatosis segmentationwhole-slide microscopy image

Identifiers

PMID32670464
PMCPMC7363395

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.