Evidence map›Paper›PMID 32669703›Full record

ArticleScientific reports2020

New group of transmembrane proteins associated with desiccation tolerance in the anhydrobiotic midge Polypedilum vanderplanki.

Taisiya A Voronina, Alexander A Nesmelov, Sabina A Kondratyeva, Ruslan M Deviatiiarov, Yugo Miyata, Shoko Tokumoto, Richard Cornette, Oleg A Gusev, Takahiro Kikawada, Elena I Shagimardanova

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
4.2field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 15 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Taisiya A Voronina *Extreme Biology laboratory, Institute of Fundamental Medicine and Biology, Kazan Federal University, Kazan, Russia.
Alexander A Nesmelov *Extreme Biology laboratory, Institute of Fundamental Medicine and Biology, Kazan Federal University, Kazan, Russia.
Sabina A KondratyevaExtreme Biology laboratory, Institute of Fundamental Medicine and Biology, Kazan Federal University, Kazan, Russia.
Ruslan M DeviatiiarovExtreme Biology laboratory, Institute of Fundamental Medicine and Biology, Kazan Federal University, Kazan, Russia.
Yugo MiyataDivision of Biotechnology, Institute of Agrobiological Sciences, National Institute of Agriculture and Food Research Organization (NARO), Tsukuba, Japan.
Shoko TokumotoGraduate School of Frontier Sciences, The University of Tokyo, Kashiwa, Japan.
Richard CornetteDivision of Biotechnology, Institute of Agrobiological Sciences, National Institute of Agriculture and Food Research Organization (NARO), Tsukuba, Japan.
Oleg A GusevExtreme Biology laboratory, Institute of Fundamental Medicine and Biology, Kazan Federal University, Kazan, Russia.
Takahiro KikawadaDivision of Biotechnology, Institute of Agrobiological Sciences, National Institute of Agriculture and Food Research Organization (NARO), Tsukuba, Japan. kikawada@affrc.go.jp.
Elena I ShagimardanovaExtreme Biology laboratory, Institute of Fundamental Medicine and Biology, Kazan Federal University, Kazan, Russia. rjuka@mail.ru.
Kazan Federal University · RUInstitute of Agrobiological Sciences · JPThe University of Tokyo · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Larvae of the sleeping chironomid Polypedilum vanderplanki are known for their extraordinary ability to survive complete desiccation in an ametabolic state called "anhydrobiosis". The unique feature of P. vanderplanki genome is the presence of expanded gene clusters associated with anhydrobiosis. While several such clusters represent orthologues of known genes, there is a distinct set of genes unique for P. vanderplanki. These include Lea-Island-Located (LIL) genes with no known orthologues except two of LEA genes of P. vanderplanki, PvLea1 and PvLea3. However, PvLIL proteins lack typical features of LEA such as the state of intrinsic disorder, hydrophilicity and characteristic LEA_4 motif. They possess four to five transmembrane domains each and we confirmed membrane targeting for three PvLILs. Conserved amino acids in PvLIL are located in transmembrane domains or nearby. PvLEA1 and PvLEA3 proteins are chimeras combining LEA-like parts and transmembrane domains, shared with PvLIL proteins. We have found that PvLil genes are highly upregulated during anhydrobiosis induction both in larvae of P. vanderplanki and P. vanderplanki-derived cultured cell line, Pv11. Thus, PvLil are a new intriguing group of genes that are likely to be associated with anhydrobiosis due to their common origin with some LEA genes and their induction during anhydrobiosis.

Indexed as

DehydrationAmino Acid MotifsAnimalsCell LineCell MembraneChironomidaeCloning, MolecularCluster AnalysisComputer SimulationGene Expression ProfilingGene Expression RegulationInsect ProteinsLarvaMembrane ProteinsMultigene FamilyPhylogenyInsect ProteinsMembrane Proteins

Identifiers

PMID32669703
PMCPMC7363813
OpenAlexW3042903712

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.