Evidence map›Paper›PMID 32669636›Full record

ArticleScientific reports2020

Tuberculosis causes highly conserved metabolic changes in human patients, mycobacteria-infected mice and zebrafish larvae.

Yi Ding, Robert-Jan Raterink, Rubén Marín-Juez, Wouter J Veneman, Koen Egbers, Susan van den Eeden, Mariëlle C Haks, Simone A Joosten, Tom H M Ottenhoff, Amy C Harms and 3 more

Open access · goldAbstract readComparative Study
In one paragraph

Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed, 1 pooled it
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 1 synthesis or guideline pooled it, 27 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Article
  4. Article
  5. Review
  6. Article
  7. Review
  8. Review
  9. Review
  10. Microbial metabolism disrupts cytokine activity to impact host immune response.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  11. Article
  12. Article
  13. Review
  14. Biomarker discovery for tuberculosis using metabolomics.Frontiers in molecular biosciences · 2023
    Review
  15. The cause-effect relation of tuberculosis on incidence of diabetes mellitus.Frontiers in cellular and infection microbiology · 2023
    Review
  16. Sex and Gender Differences in Tuberculosis Pathogenesis and Treatment Outcomes.Current topics in microbiology and immunology · 2023
    Review
  17. Review
  18. Article
  19. Metabolomics as a Tool to Investigate HIV/TB Co-Infection.Frontiers in molecular biosciences · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 2 countries.

Yi DingInstitute of Biology, Leiden University, Sylviusweg 72, 2333 BE, Leiden, The Netherlands.
Robert-Jan RaterinkLeiden Academic Centre for Drug Research, Leiden University, Leiden, The Netherlands.
Rubén Marín-JuezInstitute of Biology, Leiden University, Sylviusweg 72, 2333 BE, Leiden, The Netherlands.
Wouter J VenemanInstitute of Biology, Leiden University, Sylviusweg 72, 2333 BE, Leiden, The Netherlands.
Koen EgbersLeiden Academic Centre for Drug Research, Leiden University, Leiden, The Netherlands.
Susan van den EedenDepartment of Infectious Diseases, Leiden University Medical Center, Leiden, The Netherlands.
Mariëlle C HaksDepartment of Infectious Diseases, Leiden University Medical Center, Leiden, The Netherlands.
Simone A JoostenDepartment of Infectious Diseases, Leiden University Medical Center, Leiden, The Netherlands.
Tom H M OttenhoffDepartment of Infectious Diseases, Leiden University Medical Center, Leiden, The Netherlands.
Amy C HarmsLeiden Academic Centre for Drug Research, Leiden University, Leiden, The Netherlands.
A AliaLeiden Institute of Chemistry, Leiden University, 2333, Leiden, The Netherlands.
Thomas HankemeierLeiden Academic Centre for Drug Research, Leiden University, Leiden, The Netherlands.
Herman P SpainkInstitute of Biology, Leiden University, Sylviusweg 72, 2333 BE, Leiden, The Netherlands. H.P.Spaink@biology.leidenuniv.nl.
Leiden University · NLLeiden University Medical Center · NLCentre for Human Drug Research · NLMax Planck Institute for Heart and Lung Research · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Tuberculosis is a highly infectious and potentially fatal disease accompanied by wasting symptoms, which cause severe metabolic changes in infected people. In this study we have compared the effect of mycobacteria infection on the level of metabolites in blood of humans and mice and whole zebrafish larvae using one highly standardized mass spectrometry pipeline, ensuring technical comparability of the results. Quantification of a range of circulating small amines showed that the levels of the majority of these compounds were significantly decreased in all three groups of infected organisms. Ten of these metabolites were common between the three different organisms comprising: methionine, asparagine, cysteine, threonine, serine, tryptophan, leucine, citrulline, ethanolamine and phenylalanine. The metabolomic changes of zebrafish larvae after infection were confirmed by nuclear magnetic resonance spectroscopy. Our study identified common biomarkers for tuberculosis disease in humans, mice and zebrafish, showing across species conservation of metabolic reprogramming processes as a result of disease. Apparently, the mechanisms underlying these processes are independent of environmental, developmental and vertebrate evolutionary factors. The zebrafish larval model is highly suited to further investigate the mechanism of metabolic reprogramming and the connection with wasting syndrome due to infection by mycobacteria.

Indexed as

AminesAnimalsChromatography, LiquidDisease Models, AnimalGlucoseHumansLarvaLeast-Squares AnalysisMagnetic Resonance SpectroscopyMass SpectrometryMiceMice, Inbred C57BLMycobacterium marinumMycobacterium tuberculosisTuberculosisZebrafishAminesGlucose

Identifiers

PMID32669636
PMCPMC7363909
OpenAlexW3042251444

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.