Evidence map›Paper›PMID 32669635›Full record

ArticleScientific reports2020

Phenotypic effects of paralogous ribosomal proteins bL31A and bL31B in E. coli.

Silva Lilleorg, Kaspar Reier, Pavel Volõnkin, Jaanus Remme, Aivar Liiv

Abstract read
In one paragraph

Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

  1. Article
  2. Article
  3. Impacts of ribosomal RNA sequence variation on gene expression and phenotype.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2025
    Review
  4. Ribosome Structural Changes Dynamically Affect Ribosome Function.International journal of molecular sciences · 2024
    Review
  5. Article
  6. Extraribosomal Functions of Bacterial Ribosomal Proteins-An Update, 2023.International journal of molecular sciences · 2024
    Review
  7. Article
  8. Zinc homeostasis in Pseudomonas.Biometals : an international journal on the role of metal ions in biology, biochemistry, and medicine · 2023
    Review
  9. Article
  10. Ribosome Protein Composition Mediates Translation during theInternational journal of molecular sciences · 2023
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Animals : an open access journal from MDPI · 2021
    Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Silva LilleorgInstitute of Molecular and Cell Biology, University of Tartu, Riia street 23B, 51010, Tartu, Estonia.
Kaspar ReierInstitute of Molecular and Cell Biology, University of Tartu, Riia street 23B, 51010, Tartu, Estonia.
Pavel VolõnkinInstitute of Molecular and Cell Biology, University of Tartu, Riia street 23B, 51010, Tartu, Estonia.
Jaanus RemmeInstitute of Molecular and Cell Biology, University of Tartu, Riia street 23B, 51010, Tartu, Estonia.
Aivar LiivInstitute of Molecular and Cell Biology, University of Tartu, Riia street 23B, 51010, Tartu, Estonia. aliiv@ut.ee.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Ribosomes are essential macromolecular complexes conducting protein biosynthesis in all domains of life. Cells can have heterogeneous ribosomes, i.e. ribosomes with various ribosomal RNA and ribosomal protein (r-protein) composition. However, the functional importance of heterogeneous ribosomes has remained elusive. One of the possible sources for ribosome heterogeneity is provided by paralogous r-proteins. In E. coli, ribosomal protein bL31 has two paralogs: bL31A encoded by rpmE and bL31B encoded by ykgM. This study investigates phenotypic effects of these ribosomal protein paralogs using bacterial strains expressing only bL31A or bL31B. We show that bL31A confers higher fitness to E. coli under lower temperatures. In addition, bL31A and bL31B have different effects on translation reading frame maintenance and apparent translation processivity in vivo as demonstrated by dual luciferase assay. In general, this study demonstrates that ribosomal protein paralog composition (bL31A versus bL31B) can affect cell growth and translation outcome.

Indexed as

Gene Expression Regulation, BacterialProtein BiosynthesisBase SequenceEscherichia coliEscherichia coli ProteinsGenes, ReporterGenetic FitnessLuciferasesPhenotypeProtein IsoformsRibosomal ProteinsRibosomesTemperatureEscherichia coli ProteinsLuciferasesProtein IsoformsRibosomal ProteinsYkgM protein, E coli

Identifiers

PMID32669635
PMCPMC7363858

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.