Evidence map›Paper›PMID 32669442›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2020

Structure-based development of a subtype-selective orexin 1 receptor antagonist.

Jan Hellmann, Matthäus Drabek, Jie Yin, Jakub Gunera, Theresa Pröll, Frank Kraus, Christopher J Langmead, Harald Hübner, Dorothee Weikert, Peter Kolb and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
3.6field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 53 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. The Art and Science of Molecular Docking.Annual review of biochemistry · 2024
    Review
  6. G Protein-Coupled Receptor-Ligand Pose and Functional Class Prediction.International journal of molecular sciences · 2024
    Article
  7. Article
  8. Article
  9. Therapeutic antagonism of the neurokinin 1 receptor in endosomes provides sustained pain relief.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  10. Constrained catecholamines gain βNature communications · 2023
    Article
  11. Review
  12. Article
  13. Article
  14. Clinical, Genetic and Functional Characterization of a NovelJournal of personalized medicine · 2022
    Article
  15. Leveraging nonstructural data to predict structures and affinities of protein-ligand complexes.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  16. Article
  17. Review
  18. Orexin receptors in GtoPdb v.2021.3.IUPHAR/BPS guide to pharmacology CITE · 2021
    Article
  19. Hypocretin/Orexin Receptor Pharmacology and Sleep Phases.Frontiers of neurology and neuroscience · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 3 countries.

Jan HellmannDepartment of Chemistry and Pharmacy, Medicinal Chemistry, Friedrich-Alexander-Universität Erlangen-Nürnberg, 91058 Erlangen, Germany.ORCID 0000-0002-6710-431X
Matthäus DrabekDepartment of Pharmaceutical Chemistry, Philipps-University Marburg, 35032 Marburg, Germany.ORCID 0000-0001-6994-5094
Jie YinDepartment of Biophysics, University of Texas Southwestern Medical Center, Dallas, TX 75390.
Jakub GuneraDepartment of Pharmaceutical Chemistry, Philipps-University Marburg, 35032 Marburg, Germany.
Theresa PröllDepartment of Chemistry and Pharmacy, Medicinal Chemistry, Friedrich-Alexander-Universität Erlangen-Nürnberg, 91058 Erlangen, Germany.
Frank KrausDepartment of Chemistry and Pharmacy, Medicinal Chemistry, Friedrich-Alexander-Universität Erlangen-Nürnberg, 91058 Erlangen, Germany.ORCID 0000-0003-2424-9700
Christopher J LangmeadDrug Discovery Biology, Monash Institute of Pharmaceutical Sciences, Monash University, Parkville, VIC 3052, Australia.
Harald HübnerDepartment of Chemistry and Pharmacy, Medicinal Chemistry, Friedrich-Alexander-Universität Erlangen-Nürnberg, 91058 Erlangen, Germany.ORCID 0000-0002-7892-599X
Dorothee WeikertDepartment of Chemistry and Pharmacy, Medicinal Chemistry, Friedrich-Alexander-Universität Erlangen-Nürnberg, 91058 Erlangen, Germany.ORCID 0000-0003-2259-9002
Peter KolbDepartment of Pharmaceutical Chemistry, Philipps-University Marburg, 35032 Marburg, Germany; peter.kolb@uni-marburg.de dan.rosenbaum@utsouthwestern.edu peter.gmeiner@fau.de.ORCID 0000-0003-4089-614X
Daniel M RosenbaumDepartment of Biophysics, University of Texas Southwestern Medical Center, Dallas, TX 75390; peter.kolb@uni-marburg.de dan.rosenbaum@utsouthwestern.edu peter.gmeiner@fau.de.ORCID 0000-0002-7174-4993
Peter GmeinerDepartment of Chemistry and Pharmacy, Medicinal Chemistry, Friedrich-Alexander-Universität Erlangen-Nürnberg, 91058 Erlangen, Germany; peter.kolb@uni-marburg.de dan.rosenbaum@utsouthwestern.edu peter.gmeiner@fau.de.ORCID 0000-0002-4127-197X
Friedrich-Alexander-Universität Erlangen-Nürnberg · DEPhilipps University of Marburg · DEThe University of Texas Southwestern Medical Center · USMonash University · AU

Funding

Structural elucidation and development of agonists for the human orexin receptorsR01NS103939 · NINDS · UT SOUTHWESTERN MEDICAL CENTER · PI DE BRABANDER, JEF KAREL, ROSENBAUM, DANIEL · 2017 to 2021
$2.2M
NINDS NIH HHS R01 NS103939
6 · The paper itself

Abstract

Orexins are neuropeptides that activate the rhodopsin-like G protein-coupled receptors OX1R and OX2R. The orexin system plays an important role in the regulation of the sleep-wake cycle and the regulation of feeding and emotions. The nonselective orexin receptor antagonist suvorexant has been the first drug on the market targeting the orexin system and is prescribed for the treatment of insomnia. Subtype-selective OX1R antagonists are valuable tools to further investigate the functions and physiological role of the OX1R in vivo and promising lead compounds for the treatment of drug addiction, anxiety, pain or obesity. Starting from the OX1R and OX2R crystal structures bound to suvorexant, we exploited a single amino acid difference in the orthosteric binding site by using molecular docking and structure-based drug design to optimize ligand interactions with the OX1R while introducing repulsive interactions with the OX2R. A newly established enantiospecific synthesis provided ligands showing up to 75-fold selectivity for the OX1R over the OX2R subtype. The structure of a new OX1R antagonist with subnanomolar affinity (JH112) was determined by crystallography in complex with the OX1R and corresponded closely to the docking-predicted geometry. JH112 exhibits high selectivity over a panel of different GPCRs, is able to cross the blood-brain barrier and acts as slowly diffusing and insurmountable antagonist for G

Indexed as

Molecular Docking SimulationMolecular Dynamics SimulationBinding SitesCrystallographyDrug DesignKineticsLigandsOrexin Receptor AntagonistsOrexin ReceptorsProtein BindingProtein ConformationReceptors, G-Protein-CoupledStructure-Activity RelationshipLigandsOrexin Receptor AntagonistsOrexin ReceptorsReceptors, G-Protein-Coupledcrystal structuredrug designGPCRorexin receptorsubtype selectivity

Identifiers

PMID32669442
PMCPMC7395530
OpenAlexW3042639876

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.