Evidence map›Paper›PMID 32668240›Full record

ArticleCell reports2020

Systematic Characterization of Recurrent Genomic Alterations in Cyclin-Dependent Kinases Reveals Potential Therapeutic Strategies for Cancer Treatment.

Weiwei Shan, Jiao Yuan, Zhongyi Hu, Junjie Jiang, Yueying Wang, Nicki Loo, Lingling Fan, Zhaoqing Tang, Tianli Zhang, Mu Xu and 9 more

Open access · goldAbstract read
In one paragraph

Article in Cell reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.6field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 36 citations in OpenAlex.

  1. Targeting CDKs in the RNAPII transcription cycle.Nature reviews. Drug discovery · 2026
    Review
  2. Article
  3. Article
  4. Review
  5. Article
  6. Review
  7. Review
  8. Review
  9. Article
  10. Article
  11. Review
  12. Review
  13. Review
  14. Article
  15. Article
  16. Targeting transcription cycles in cancer.Nature reviews. Cancer · 2022
    Review
  17. Article
  18. Review
  19. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 3 institutions in 1 country.

Weiwei ShanCenter for Research on Reproduction & Women's Health, University of Pennsylvania, Philadelphia, PA 19104, USA; Department of Obstetrics and Gynecology, University of Pennsylvania, Philadelphia, PA 19104, USA.
Jiao YuanCenter for Research on Reproduction & Women's Health, University of Pennsylvania, Philadelphia, PA 19104, USA.
Zhongyi HuCenter for Research on Reproduction & Women's Health, University of Pennsylvania, Philadelphia, PA 19104, USA.
Junjie JiangCenter for Research on Reproduction & Women's Health, University of Pennsylvania, Philadelphia, PA 19104, USA.
Yueying WangCenter for Research on Reproduction & Women's Health, University of Pennsylvania, Philadelphia, PA 19104, USA.
Nicki LooCenter for Research on Reproduction & Women's Health, University of Pennsylvania, Philadelphia, PA 19104, USA.
Lingling FanCenter for Research on Reproduction & Women's Health, University of Pennsylvania, Philadelphia, PA 19104, USA.
Zhaoqing TangCenter for Research on Reproduction & Women's Health, University of Pennsylvania, Philadelphia, PA 19104, USA.
Tianli ZhangCenter for Research on Reproduction & Women's Health, University of Pennsylvania, Philadelphia, PA 19104, USA.
Mu XuCenter for Research on Reproduction & Women's Health, University of Pennsylvania, Philadelphia, PA 19104, USA.
Yutian PanCenter for Research on Reproduction & Women's Health, University of Pennsylvania, Philadelphia, PA 19104, USA.
Jiaqi LuCenter for Research on Reproduction & Women's Health, University of Pennsylvania, Philadelphia, PA 19104, USA.
Meixiao LongDepartment of Internal Medicine, Division of Hematology, Ohio State University, Columbus, OH 43210, USA.
Janos L TanyiDepartment of Obstetrics and Gynecology, University of Pennsylvania, Philadelphia, PA 19104, USA.
Kathleen T MontoneDepartment of Pathology and Laboratory Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.
Yi FanDepartment of Radiation Oncology, University of Pennsylvania, Philadelphia, PA 19104, USA.
Xiaowen HuCenter for Research on Reproduction & Women's Health, University of Pennsylvania, Philadelphia, PA 19104, USA; Department of Obstetrics and Gynecology, University of Pennsylvania, Philadelphia, PA 19104, USA.
Youyou ZhangCenter for Research on Reproduction & Women's Health, University of Pennsylvania, Philadelphia, PA 19104, USA; Department of Obstetrics and Gynecology, University of Pennsylvania, Philadelphia, PA 19104, USA. Electronic address: youyouzh@pennmedicine.upenn.edu.
Lin ZhangCenter for Research on Reproduction & Women's Health, University of Pennsylvania, Philadelphia, PA 19104, USA; Department of Obstetrics and Gynecology, University of Pennsylvania, Philadelphia, PA 19104, USA. Electronic address: linzhang@pennmedicine.upenn.edu.
University of Pennsylvania · USThe Ohio State University · USUniversity of Pennsylvania Health System · US

Funding

Therapeutic Micro RNA Strategies for Ovarian CancerP50CA083638 · NCI · RESEARCH INST OF FOX CHASE CAN CTR · PI GODWIN, ANDREW K., GOLEMIS, ERICA A. · 1999 to 2013
$33.6M
Targeted Combination Therapy for MelanomaP50CA174523 · NCI · WISTAR INSTITUTE · PI HERLYN, MEENHARD F · 2014 to 2018
$11.1M
Molecular mechanism and preclinical development of BETi and PARPi combination therapyR01CA225929 · NCI · UNIVERSITY OF PENNSYLVANIA · PI ZHANG, LIN · 2019 to 2023
$1.8M
The epigenetic mechanism of long non-coding RNA in cancerR01CA190415 · NCI · UNIVERSITY OF PENNSYLVANIA · PI ZHANG, LIN · 2015 to 2019
$1.8M
The role of microRNA, mir-30d, in the initiation and progression of cancerR01CA142776 · NCI · UNIVERSITY OF PENNSYLVANIA · PI ZHANG, LIN · 2010 to 2014
$1.6M
NCI NIH HHS P50 CA083638NCI NIH HHS P50 CA174523NCI NIH HHS R01 CA142776NCI NIH HHS R01 CA190415NCI NIH HHS R01 CA225929
6 · The paper itself

Abstract

Recurrent copy-number alterations, mutations, and transcript fusions of the genes encoding CDKs/cyclins are characterized in >10,000 tumors. Genomic alterations of CDKs/cyclins are dominantly driven by copy number aberrations. In contrast to cell-cycle-related CDKs/cyclins, which are globally amplified, transcriptional CDKs/cyclins recurrently lose copy numbers across cancers. Although mutations and transcript fusions are relatively rare events, CDK12 exhibits recurrent mutations in multiple cancers. Among the transcriptional CDKs, CDK7 and CDK12 show the most significant copy number loss and mutation, respectively. Their genomic alterations are correlated with increased sensitivities to DNA-damaging drugs. Inhibition of CDK7 preferentially represses the expression of genes in the DNA-damage-repair pathways and impairs the activity of homologous recombination. Low-dose CDK7 inhibitor treatment sensitizes cancer cells to PARP inhibitor-induced DNA damage and cell death. Our analysis provides genomic information for identification and prioritization of drug targets for CDKs and reveals rationales for treatment strategies.

Indexed as

Genome, HumanAnimalsAntineoplastic AgentsCell DeathCell Line, TumorCyclin-Dependent KinasesCyclinsDNA Copy Number VariationsDNA DamageDNA RepairFemaleGene Expression Regulation, NeoplasticHumansMice, NudeMutationNeoplasm ProteinsAntineoplastic AgentsCyclin-Dependent KinasesCyclinsNeoplasm ProteinsPhenylenediaminesPoly(ADP-ribose) Polymerase InhibitorsPyrimidinesTHZ1 compoundcancerCDK7 inhibitorcombination therapycyclin-dependent kinasegenomic alterationPARP inhibitor

Identifiers

PMID32668240
PMCPMC7391471
OpenAlexW3042842519

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.