Evidence map›Paper›PMID 32667955›Full record

ArticlePLoS genetics2020

A novel allele of ASY3 is associated with greater meiotic stability in autotetraploid Arabidopsis lyrata.

Paul J Seear, Martin G France, Catherine L Gregory, Darren Heavens, Roswitha Schmickl, Levi Yant, James D Higgins

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
6.3field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 39 citations in OpenAlex.

  1. Article
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  10. Genomics of plant speciation.Plant communications · 2023
    Review
  11. Article
  12. Review
  13. Article
  14. Article
  15. Meiosis in allopolyploid Arabidopsis suecica.The Plant journal : for cell and molecular biology · 2022
    Article
  16. Article
  17. Review
  18. Review
  19. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 2 countries.

Paul J SeearDepartment of Genetics and Genome Biology, University of Leicester, Leicester, United Kingdom.ORCID 0000-0003-4303-5943
Martin G FranceDepartment of Genetics and Genome Biology, University of Leicester, Leicester, United Kingdom.
Catherine L GregoryDepartment of Genetics and Genome Biology, University of Leicester, Leicester, United Kingdom.
Darren HeavensEarlham Institute, Norwich Research Park Innovation Centre, Norwich, United Kingdom.ORCID 0000-0001-5418-7868
Roswitha SchmicklDepartment of Botany, Faculty of Science, Charles University, Prague, Czech Republic.
Levi YantFuture Food Beacon of Excellence and the School of Life Sciences, University of Nottingham, Nottingham, United Kingdom.ORCID 0000-0003-3442-0217
James D HigginsDepartment of Genetics and Genome Biology, University of Leicester, Leicester, United Kingdom.ORCID 0000-0001-6027-8678
University of Leicester · GBCharles University · CZNorwich Research Park · GBUniversity of Nottingham · GB

Funding

Biotechnology and Biological Sciences Research Council BB/M01973X/1Biotechnology and Biological Sciences Research Council BB/P013511/1
6 · The paper itself

Abstract

In this study we performed a genotype-phenotype association analysis of meiotic stability in 10 autotetraploid Arabidopsis lyrata and A. lyrata/A. arenosa hybrid populations collected from the Wachau region and East Austrian Forealps. The aim was to determine the effect of eight meiosis genes under extreme selection upon adaptation to whole genome duplication. Individual plants were genotyped by high-throughput sequencing of the eight meiosis genes (ASY1, ASY3, PDS5b, PRD3, REC8, SMC3, ZYP1a/b) implicated in synaptonemal complex formation and phenotyped by assessing meiotic metaphase I chromosome configurations. Our results reveal that meiotic stability varied greatly (20-100%) between individual tetraploid plants and associated with segregation of a novel ASYNAPSIS3 (ASY3) allele derived from A. lyrata. The ASY3 allele that associates with meiotic stability possesses a putative in-frame tandem duplication (TD) of a serine-rich region upstream of the coiled-coil domain that appears to have arisen at sites of DNA microhomology. The frequency of multivalents observed in plants homozygous for the ASY3 TD haplotype was significantly lower than in plants heterozygous for ASY3 TD/ND (non-duplicated) haplotypes. The chiasma distribution was significantly altered in the stable plants compared to the unstable plants with a shift from proximal and interstitial to predominantly distal locations. The number of HEI10 foci at pachytene that mark class I crossovers was significantly reduced in a plant homozygous for ASY3 TD compared to a plant heterozygous for ASY3 ND/TD. Fifty-eight alleles of the 8 meiosis genes were identified from the 10 populations analysed, demonstrating dynamic population variability at these loci. Widespread chimerism between alleles originating from A. lyrata/A. arenosa and diploid/tetraploids indicates that this group of rapidly evolving genes may provide precise adaptive control over meiotic recombination in the tetraploids, the very process that gave rise to them.

Indexed as

AllelesArabidopsisArabidopsis ProteinsChromosomal Proteins, Non-HistoneChromosome PairingChromosome SegregationChromosomes, PlantDiploidyDNA-Binding ProteinsMeiosisTetraploidyArabidopsis ProteinsASY3 protein, ArabidopsisChromosomal Proteins, Non-HistoneDNA-Binding ProteinsHEI10 protein, Arabidopsis

Identifiers

PMID32667955
PMCPMC7392332
OpenAlexW3043174911

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.