Evidence map›Paper›PMID 32665124›Full record

ArticleUrologic oncology2020

A copy number gain on 18q present in primary prostate tumors is associated with metastatic outcome.

Keith A Ashcraft, Teresa L Johnson-Pais, Dean A Troyer, Javier Hernandez, Robin J Leach

Open access · greenAbstract read
In one paragraph

Article in Urologic oncology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact, top 87% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 0 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Keith A AshcraftDepartment of Urology, The University of Texas Health Science Center San Antonio, San Antonio, Texas.
Teresa L Johnson-PaisDepartment of Urology, The University of Texas Health Science Center San Antonio, San Antonio, Texas.
Dean A TroyerEastern Virginia Medical School, Pathology, Microbiology and Molecular Biology, Norfolk, Virginia.
Javier HernandezDepartment of Urology, The University of Texas Health Science Center San Antonio, San Antonio, Texas.
Robin J LeachDepartment of Urology, The University of Texas Health Science Center San Antonio, San Antonio, Texas; Department of Cell Systems and Anatomy, The University of Texas Health Science Center San Antonio, San Antonio, Texas. Electronic address: leach@uthscsa.edu.
The University of Texas Health Science Center at San Antonio · USEastern Virginia Medical School · US

Funding

TISSUE CULTURE---COREP30CA054174 · NCI · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI Lei Zheng · 1991 to 2026
$59.1M
SAN ANTONIO CENTER OF BIOMARKERS OF RISK FOR PROSTATE CAU01CA086402 · NCI · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI LEACH, ROBIN JEAN, THOMPSON, IAN M. · 2000 to 2018
$33.1M
San Antonio Biomedical Education and ResearchK12GM111726 · NIGMS · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI LECHLEITER, JAMES D, OYAJOBI, BABATUNDE OLUKAYODE · 2015 to 2024
$7.6M
NCI NIH HHS P30 CA054174NCI NIH HHS U01 CA086402NIGMS NIH HHS K12 GM111726
6 · The paper itself

Abstract

backgroundMost prostate cancers (CaPs) grow slowly and remain indolent, yet some become aggressive and metastasize. Clinical decision-making requires prognostic markers that can be utilized at the time of diagnosis to identify aggressive tumors. Previous studies have shown a correlation between genomic alterations on the long arm of chromosome 18 (18q) and metastatic CaP.

objectiveThe goal of this study was to comprehensively profile copy number alterations found on 18q in prostate tumors with varying outcomes to identify putative biomarkers associated with more aggressive disease

methodsA custom comparative genomic hybridization array was created composed of high-density tiling of 18q sequences. Primary prostate tumor tissues were gathered from men who underwent radical prostatectomy and were categorized based on the patient's long-term clinical outcome as either metastatic disease (MET) or no evidence of disease (NED). DNA was isolated from formalin-fixed, paraffin-embedded prostatectomy tumor tissues, and analyzed for copy number variations (CNVs). Protein levels of genes found within the region of CNVs were analyzed using immunohistochemistry.

resultsThirty-Four primary prostate tumors were analyzed: 17 NEDs and 17 METs. Two significant regions of copy number gains were found on 18q associated with outcome. One gain located at 18q11.2 was found exclusively in NED outcome tumors while another gain, located at 18q21.31, was found exclusively in MET outcome tumors (P -value< 0.0076). Immunohistochemistry analysis of protein levels showed more protein associated with copy number gain in the MET samples vs. those without the gain as indicated by H-scores of 184.7 and 121.0 respectively.

conclusionsThe latter of these CNVs represent a putative biomarker for aggressive disease and highlights a putative metastasis promoting gene. Further study of known connections to CaP suggests that the paracaspase MALT1 is the most likely target of the copy number gain and represents a potential therapeutic target. Future studies would be of interest to determine MALT1's role in aggressive CaP and the ability of this CNV region to differentiate CaP that will eventually metastasize.

Indexed as

DNA Copy Number VariationsAdultAgedAged, 80 and overHumansMaleMiddle AgedNeoplasm MetastasisProstatectomyProstatic NeoplasmsArray CGHChromosome 18MALT1OutcomeProstate cancer

Identifiers

PMID32665124
PMCPMC7996004
OpenAlexW3041636842

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.