Evidence map›Paper›PMID 32662223›Full record

ArticleJournal of thrombosis and haemostasis : JTH2020

High-content, label-free analysis of proplatelet production from megakaryocytes.

Shauna L French, Prakrith Vijey, Kyle W Karhohs, Adrian R Wilkie, Lillian J Horin, Anjana Ray, Benjamin Posorske, Anne E Carpenter, Kellie R Machlus, Joseph E Italiano

Open access · greenAbstract read
In one paragraph

Article in Journal of thrombosis and haemostasis : JTH, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.5field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 15 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Shauna L FrenchDivision of Hematology, Brigham and Women's Hospital, Boston, MA, USA.
Prakrith VijeyDivision of Hematology, Brigham and Women's Hospital, Boston, MA, USA.
Kyle W KarhohsImaging Platform, Broad Institute of Harvard and MIT, Cambridge, MA, USA.
Adrian R WilkieDivision of Hematology, Brigham and Women's Hospital, Boston, MA, USA.
Lillian J HorinDepartment of Medicine, Harvard Medical School, Boston, MA, USA.ORCID 0000-0003-1099-5673
Anjana RayDivision of Hematology, Brigham and Women's Hospital, Boston, MA, USA.
Benjamin PosorskeDivision of Hematology, Brigham and Women's Hospital, Boston, MA, USA.
Anne E CarpenterImaging Platform, Broad Institute of Harvard and MIT, Cambridge, MA, USA.
Kellie R MachlusDivision of Hematology, Brigham and Women's Hospital, Boston, MA, USA.ORCID 0000-0002-2155-1050
Joseph E ItalianoDivision of Hematology, Brigham and Women's Hospital, Boston, MA, USA.ORCID 0000-0001-6547-9663
Brigham and Women's Hospital · USBroad Institute · USHarvard University · US

Funding

TRANSFUSION BIOLOGY AND MEDICINET32HL066987 · NHLBI · CHILDREN'S HOSPITAL BOSTON · PI JOHN P MANIS · 2001 to 2026
$10.2M
Cytoskeletal Mechanisms of Platelet FormationR01HL068130 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI ITALIANO, JOSEPH E · 2001 to 2021
$8.1M
Extracting rich information from biological imagesR35GM122547 · NIGMS · BROAD INSTITUTE, INC. · PI Anne E. Carpenter · 2017 to 2026
$6.2M
Vascular Thiol Isomerases in ThrombosisR01HL136394 · NHLBI · BETH ISRAEL DEACONESS MEDICAL CENTER · PI ITALIANO, JOSEPH E, ZWICKER, JEFFREY · 2017 to 2020
$3.3M
The Biogenesis of Platelet-Derived Extracellular Vesicles and their Impact on Megakaryocyte MaturationR01HL151494 · NHLBI · BOSTON CHILDREN'S HOSPITAL · PI MACHLUS, KELLIE RAE · 2021 to 2025
$2.9M
Elucidation of the mechanisms by which fatty acids drive megakaryopoiesisR01DK139341 · NIDDK · BOSTON CHILDREN'S HOSPITAL · PI Kellie Rae Machlus · 2024 to 2026
$1.1M
Molecular mechanisms of megakaryocyte differentiation and maturation during inflammationK01DK111515 · NIDDK · BRIGHAM AND WOMEN'S HOSPITAL · PI MACHLUS, KELLIE RAE · 2016 to 2020
$793k
The Role of CCL5 in Hematopoietic Stem Cell Activation and SkewingR03DK124746 · NIDDK · BOSTON CHILDREN'S HOSPITAL · PI MACHLUS, KELLIE RAE · 2021 to 2022
$266k
NHLBI NIH HHS R01 HL068130NHLBI NIH HHS R01 HL136394NHLBI NIH HHS R01 HL151494NHLBI NIH HHS T32 HL066987NIDDK NIH HHS K01 DK111515NIDDK NIH HHS R01 DK139341NIDDK NIH HHS R03 DK124746NIGMS NIH HHS R35 GM122547
6 · The paper itself

Abstract

backgroundThe mechanisms that regulate platelet biogenesis remain unclear; factors that trigger megakaryocytes (MKs) to initiate platelet production are poorly understood. Platelet formation begins with proplatelets, which are cellular extensions originating from the MK cell body.

objectivesProplatelet formation is an asynchronous and dynamic process that poses unique challenges for researchers to accurately capture and analyze. We have designed an open-source, high-content, high-throughput, label-free analysis platform.

methodsPhase-contrast images of live, primary MKs are captured over a 24-hour period. Pixel-based machine-learning classification done by ilastik generates probability maps of key cellular features (circular MKs and branching proplatelets), which are processed by a customized CellProfiler pipeline to identify and filter structures of interest based on morphology. A subsequent reinforcement classification, by CellProfiler Analyst, improves the detection of cellular structures.

resultsThis workflow yields the percent of proplatelet production, area, count of proplatelets and MKs, and other statistics including skeletonization information for measuring proplatelet branching and length. We propose using a combination of these analyzed metrics, in particular the area measurements of MKs and proplatelets, when assessing in vitro proplatelet production. Accuracy was validated against manually counted images and an existing algorithm. We then used the new platform to test compounds known to cause thrombocytopenia, including bromodomain inhibitors, and uncovered previously unrecognized effects of drugs on proplatelet formation, thus demonstrating the utility of our analysis platform.

conclusionThis advance in creating unbiased data analysis will increase the scale and scope of proplatelet production studies and potentially serve as a valuable resource for investigating molecular mechanisms of thrombocytopenia.

Indexed as

MegakaryocytesThrombocytopeniaBlood PlateletsCells, CulturedHumansThrombopoiesishigh content/throughputimage analysismachine learningopen-sourceproplatelet formation

Identifiers

PMID32662223
PMCPMC7988437
OpenAlexW3042889242

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.