Evidence map›Paper›PMID 32662044›Full record

ArticleJournal of molecular neuroscience : MN2021

Association of TOR1A and GCH1 Polymorphisms with Isolated Dystonia in India.

Subhajit Giri, Arunibha Ghosh, Shubhrajit Roy, Charulata Savant Sankhla, Shyamal Kumar Das, Kunal Ray, Jharna Ray

Abstract read
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In one paragraph

Article in Journal of molecular neuroscience : MN, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.1field-weighted citation impact, top 55% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 2 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Subhajit GiriS.N. Pradhan Centre for Neurosciences, University of Calcutta, Kolkata, India.ORCID https://orcid.org/0000-0003-0126-043X
Arunibha GhoshS.N. Pradhan Centre for Neurosciences, University of Calcutta, Kolkata, India.
Shubhrajit RoyS.N. Pradhan Centre for Neurosciences, University of Calcutta, Kolkata, India.ORCID https://orcid.org/0000-0001-7914-7723
Charulata Savant SankhlaP. D. Hinduja National Hospital & Medical Research Centre, Mumbai, India.
Shyamal Kumar DasBangur Institute of Neurosciences, Kolkata, India.
Kunal RayATGC Diagnostics Private Limited, Kolkata, India.ORCID https://orcid.org/0000-0001-9989-1760
Jharna RayS.N. Pradhan Centre for Neurosciences, University of Calcutta, Kolkata, India. jharnaray@gmail.com.ORCID https://orcid.org/0000-0003-0378-2768
University of Calcutta · INBangur Institute of Neurosciences · INP. D. Hinduja Hospital and Medical Research Centre · IN

Funding

Department of Science and Technology, Ministry of Science and Technology DST-PURSE and DST-CSIUniversity Grants Commission F.14-38/2007(Inno./ASIST)
6 · The paper itself

Abstract

Isolated dystonia is a common movement disorder often caused by genetic mutations, although it is predominantly sporadic in nature. Common variants of dystonia-related genes were reported to be risk factors for idiopathic isolated dystonia. In this study, we aimed to analyse the roles of previously reported GTP cyclohydrolase (GCH1) and Torsin family 1 member A (TOR1A) polymorphisms in an Indian isolated dystonia case-control group. A total of 292 sporadic isolated dystonia patients and 316 control individuals were genotyped for single-nucleotide polymorphisms (SNPs) of GCH1 (rs3759664:G > A, rs12147422:A > G and rs10483639:C > G) and TOR1A (rs13300897:G > A, rs1801968:G > C, rs1182:G > T and rs3842225:G > Δ) using polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP) and confirmed by direct Sanger sequencing. The statistical significance of allelic, genotypic and haplotypic associations of all of the SNPs were evaluated using the two-tailed Fisher exact test. The minor allele (A) of rs3759664 is significantly associated with isolated limb dystonia as a risk factor (p = 0.005). The minor allele (C) of rs1801968 is strongly associated with isolated dystonia (p < 0.0001) and most of its subtypes. The major allele of rs3842225 (G) may act as a significant risk factor for Writer's cramp (p = 0.03). Four different haplogroups comprising of either rs1182 or rs3842225 or in combination with rs1801968 and rs13300897 were found to be significantly associated with isolated dystonia. No other allelic, genotypic or haplotypic association was found to be significant with isolated dystonia cohort or its endophenotype stratified groups. Our study suggests that TOR1A common variants have a significant role in isolated dystonia pathogenesis in the Indian population, whereas SNPs in the GCH1 gene may have a limited role.

Indexed as

Polymorphism, Single NucleotideAdolescentAdultAllelesDystoniaFemaleGenetic HeterogeneityGenotypeGTP CyclohydrolaseHumansIndiaMaleMiddle AgedMolecular ChaperonesGCH1 protein, humanGTP CyclohydrolaseMolecular ChaperonesTOR1A protein, humanAssociation studyGCH1HaplotypeIsolated dystoniaTOR1A

Identifiers

PMID32662044
OpenAlexW3028749115

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.